miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29258 3' -58.3 NC_006150.1 + 107270 0.66 0.875646
Target:  5'- gGCAgaUUGCgc-CGCCGGCGCuucucGGGCc -3'
miRNA:   3'- aCGUa-AACGgacGCGGUCGCGu----CCCG- -5'
29258 3' -58.3 NC_006150.1 + 71020 0.66 0.868488
Target:  5'- gUGCGcucGCUgGCGCaCAuGCGguGGGCc -3'
miRNA:   3'- -ACGUaaaCGGaCGCG-GU-CGCguCCCG- -5'
29258 3' -58.3 NC_006150.1 + 63099 0.66 0.868488
Target:  5'- cGCG-UUGCCUGCauCCAGCGCAc--- -3'
miRNA:   3'- aCGUaAACGGACGc-GGUCGCGUcccg -5'
29258 3' -58.3 NC_006150.1 + 45872 0.66 0.86038
Target:  5'- aUGUGUaUGCCUaGCGUggauuugucuccgCAGCGCcGGGUc -3'
miRNA:   3'- -ACGUAaACGGA-CGCG-------------GUCGCGuCCCG- -5'
29258 3' -58.3 NC_006150.1 + 183373 0.66 0.853568
Target:  5'- uUGUAUccgUUGUUUGUGCaGGCGCGGcGGUu -3'
miRNA:   3'- -ACGUA---AACGGACGCGgUCGCGUC-CCG- -5'
29258 3' -58.3 NC_006150.1 + 106134 0.66 0.853568
Target:  5'- aGCAUgugGCCcuuUG-CAGCGUGGGGCg -3'
miRNA:   3'- aCGUAaa-CGGac-GCgGUCGCGUCCCG- -5'
29258 3' -58.3 NC_006150.1 + 137775 0.66 0.853568
Target:  5'- gGCGguuugGCCUGgGCCuuuggaggAGCGggaagaauggcuCAGGGCg -3'
miRNA:   3'- aCGUaaa--CGGACgCGG--------UCGC------------GUCCCG- -5'
29258 3' -58.3 NC_006150.1 + 92355 0.66 0.853568
Target:  5'- gGCGUcccgaGUCUGgGCCgGGCGguGGGg -3'
miRNA:   3'- aCGUAaa---CGGACgCGG-UCGCguCCCg -5'
29258 3' -58.3 NC_006150.1 + 120994 0.66 0.845817
Target:  5'- cUGUuUUUGUCUGCGCUguugcuGCGCggcuucucguAGGGUg -3'
miRNA:   3'- -ACGuAAACGGACGCGGu-----CGCG----------UCCCG- -5'
29258 3' -58.3 NC_006150.1 + 8060 0.66 0.843455
Target:  5'- cUGCAUcUGCUaccgauuaaaaagaUGgGCCAGCGCAGucaguGCc -3'
miRNA:   3'- -ACGUAaACGG--------------ACgCGGUCGCGUCc----CG- -5'
29258 3' -58.3 NC_006150.1 + 69420 0.66 0.837881
Target:  5'- cGCAc--GUCcGCGCCga-GCAGGGCa -3'
miRNA:   3'- aCGUaaaCGGaCGCGGucgCGUCCCG- -5'
29258 3' -58.3 NC_006150.1 + 174698 0.67 0.829766
Target:  5'- aGCAUUggguuCCgGgGUCGGUGCAGGaGCg -3'
miRNA:   3'- aCGUAAac---GGaCgCGGUCGCGUCC-CG- -5'
29258 3' -58.3 NC_006150.1 + 1462 0.67 0.821478
Target:  5'- gUGCAg--GC--GCGCCAGCGgguuaAGGGUg -3'
miRNA:   3'- -ACGUaaaCGgaCGCGGUCGCg----UCCCG- -5'
29258 3' -58.3 NC_006150.1 + 156651 0.67 0.786759
Target:  5'- cUGCAgagGCUUGUGCCAGUggaaucaaGCAGGc- -3'
miRNA:   3'- -ACGUaaaCGGACGCGGUCG--------CGUCCcg -5'
29258 3' -58.3 NC_006150.1 + 104929 0.68 0.768569
Target:  5'- -----aUGCCgUGgGUguGUGCAGGGCu -3'
miRNA:   3'- acguaaACGG-ACgCGguCGCGUCCCG- -5'
29258 3' -58.3 NC_006150.1 + 167671 0.68 0.740433
Target:  5'- gUGCAg--GCCccaugGuCGUCGGCGCAGGagGCa -3'
miRNA:   3'- -ACGUaaaCGGa----C-GCGGUCGCGUCC--CG- -5'
29258 3' -58.3 NC_006150.1 + 27039 0.68 0.740433
Target:  5'- aGCAgggagUGCCUGgaGCCAcuuaCGCGGGGg -3'
miRNA:   3'- aCGUaa---ACGGACg-CGGUc---GCGUCCCg -5'
29258 3' -58.3 NC_006150.1 + 196048 0.68 0.73948
Target:  5'- gGCAagUGCUuucugacauguuaUGUGCCGGCGCGuuGGCg -3'
miRNA:   3'- aCGUaaACGG-------------ACGCGGUCGCGUc-CCG- -5'
29258 3' -58.3 NC_006150.1 + 38118 0.69 0.711484
Target:  5'- aGCGUUUcGUCcGCGCgAaUGCGGGGCg -3'
miRNA:   3'- aCGUAAA-CGGaCGCGgUcGCGUCCCG- -5'
29258 3' -58.3 NC_006150.1 + 184092 0.69 0.701694
Target:  5'- cGCAUgacgUGUg-GUGUCAGUGCGGGGa -3'
miRNA:   3'- aCGUAa---ACGgaCGCGGUCGCGUCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.