miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29258 5' -59.1 NC_006150.1 + 216630 0.66 0.84118
Target:  5'- gUGGCGGCUGCGgUGCUcgGCAG--GGAc -3'
miRNA:   3'- -ACCGCUGACGCgGUGG--CGUCaaCCUu -5'
29258 5' -59.1 NC_006150.1 + 91080 0.66 0.833183
Target:  5'- aUGGCucCUGCGgCACCcGCGGUgaugugugcUGGAc -3'
miRNA:   3'- -ACCGcuGACGCgGUGG-CGUCA---------ACCUu -5'
29258 5' -59.1 NC_006150.1 + 217779 0.66 0.833183
Target:  5'- gGGUGACUGUGaCAU--CAGUUGGAAg -3'
miRNA:   3'- aCCGCUGACGCgGUGgcGUCAACCUU- -5'
29258 5' -59.1 NC_006150.1 + 88075 0.66 0.825014
Target:  5'- cGGCgccgcgGACUGCGCCACCGagcuccGGGc -3'
miRNA:   3'- aCCG------CUGACGCGGUGGCgucaa-CCUu -5'
29258 5' -59.1 NC_006150.1 + 88857 0.66 0.811601
Target:  5'- gGGCGGCUGCGa-ACCGCAaucgcuucggcgaucGcUGGAGc -3'
miRNA:   3'- aCCGCUGACGCggUGGCGU---------------CaACCUU- -5'
29258 5' -59.1 NC_006150.1 + 86161 0.66 0.808185
Target:  5'- gUGGUGAUUGCGCCGCUcuugaugggGCucacggUGGAu -3'
miRNA:   3'- -ACCGCUGACGCGGUGG---------CGuca---ACCUu -5'
29258 5' -59.1 NC_006150.1 + 119030 0.66 0.808185
Target:  5'- cGGCGccGCUG-GCCACgCGCGGcaccUGGAu -3'
miRNA:   3'- aCCGC--UGACgCGGUG-GCGUCa---ACCUu -5'
29258 5' -59.1 NC_006150.1 + 2413 0.67 0.772779
Target:  5'- cUGGCGGCUgGUGCCGuuGCGGgugUGu-- -3'
miRNA:   3'- -ACCGCUGA-CGCGGUggCGUCa--ACcuu -5'
29258 5' -59.1 NC_006150.1 + 106266 0.67 0.772779
Target:  5'- cGGCaACaGcCGCgGCCGCGGggGGAGa -3'
miRNA:   3'- aCCGcUGaC-GCGgUGGCGUCaaCCUU- -5'
29258 5' -59.1 NC_006150.1 + 128898 0.67 0.754331
Target:  5'- aGGCGGCa--GCCGCCGaGGggGGAGa -3'
miRNA:   3'- aCCGCUGacgCGGUGGCgUCaaCCUU- -5'
29258 5' -59.1 NC_006150.1 + 37690 0.67 0.754331
Target:  5'- gGGCGACUGUGCCGCU-----UGGGg -3'
miRNA:   3'- aCCGCUGACGCGGUGGcgucaACCUu -5'
29258 5' -59.1 NC_006150.1 + 75672 0.68 0.724954
Target:  5'- -cGCGAUaugcuaaUGCGCaCAUCGCAGUuugUGGAAg -3'
miRNA:   3'- acCGCUG-------ACGCG-GUGGCGUCA---ACCUU- -5'
29258 5' -59.1 NC_006150.1 + 147837 0.68 0.716278
Target:  5'- gGGUGGCUGUGUugUACCGUGGUgcaacacggagaUGGAAa -3'
miRNA:   3'- aCCGCUGACGCG--GUGGCGUCA------------ACCUU- -5'
29258 5' -59.1 NC_006150.1 + 1515 0.69 0.657324
Target:  5'- cGGCGG-UGCuccaGUCGCCGCAgGUUGGAc -3'
miRNA:   3'- aCCGCUgACG----CGGUGGCGU-CAACCUu -5'
29258 5' -59.1 NC_006150.1 + 135529 0.7 0.577897
Target:  5'- aGGUcGCcaugGUGCCGCCGCGGUggUGGAc -3'
miRNA:   3'- aCCGcUGa---CGCGGUGGCGUCA--ACCUu -5'
29258 5' -59.1 NC_006150.1 + 115707 0.71 0.568065
Target:  5'- cGGCGA--GCGa-GCCGCGGUUGGAc -3'
miRNA:   3'- aCCGCUgaCGCggUGGCGUCAACCUu -5'
29258 5' -59.1 NC_006150.1 + 215119 0.71 0.519654
Target:  5'- aGGCGGCaGCacCCGCCGUAGUaGGAGg -3'
miRNA:   3'- aCCGCUGaCGc-GGUGGCGUCAaCCUU- -5'
29258 5' -59.1 NC_006150.1 + 219503 0.72 0.463861
Target:  5'- cUGGCGGCUGCGUagcCCGCAGUgaGAGc -3'
miRNA:   3'- -ACCGCUGACGCGgu-GGCGUCAacCUU- -5'
29258 5' -59.1 NC_006150.1 + 219761 0.73 0.419856
Target:  5'- cGGCGGCaggaccugGCGUgGCCGCGGgUGGAAc -3'
miRNA:   3'- aCCGCUGa-------CGCGgUGGCGUCaACCUU- -5'
29258 5' -59.1 NC_006150.1 + 215420 0.73 0.419856
Target:  5'- aGGCGGCUGCGa-ACCGCAcaUGGAc -3'
miRNA:   3'- aCCGCUGACGCggUGGCGUcaACCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.