miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2926 3' -60.6 NC_001493.1 + 63908 0.66 0.661018
Target:  5'- gGGCgUCGCCGuGGUGauauUCGCGGUGu- -3'
miRNA:   3'- -UUGgAGUGGC-CCACgu--GGCGCCACuu -5'
2926 3' -60.6 NC_001493.1 + 63825 0.66 0.661018
Target:  5'- gGGCgUCGCCGuGGUGauauUCGCGGUGu- -3'
miRNA:   3'- -UUGgAGUGGC-CCACgu--GGCGCCACuu -5'
2926 3' -60.6 NC_001493.1 + 63579 0.66 0.661018
Target:  5'- gGGCgUCGCCGuGGUGauauUCGCGGUGu- -3'
miRNA:   3'- -UUGgAGUGGC-CCACgu--GGCGCCACuu -5'
2926 3' -60.6 NC_001493.1 + 63298 0.66 0.661018
Target:  5'- aAGCC-CGCgGGaGcgaacgGCACCGUGGUGAc -3'
miRNA:   3'- -UUGGaGUGgCC-Ca-----CGUGGCGCCACUu -5'
2926 3' -60.6 NC_001493.1 + 86113 0.66 0.661018
Target:  5'- gGAgCUCAUCGauguugagauccGGUGCGucuCCGUGGUGAAg -3'
miRNA:   3'- -UUgGAGUGGC------------CCACGU---GGCGCCACUU- -5'
2926 3' -60.6 NC_001493.1 + 63456 0.66 0.661018
Target:  5'- gGGCgUCGCCGuGGUGauauUCGCGGUGu- -3'
miRNA:   3'- -UUGgAGUGGC-CCACgu--GGCGCCACuu -5'
2926 3' -60.6 NC_001493.1 + 27284 0.66 0.661018
Target:  5'- --aCUCACCGGcGUGC-CCGgGGUc-- -3'
miRNA:   3'- uugGAGUGGCC-CACGuGGCgCCAcuu -5'
2926 3' -60.6 NC_001493.1 + 130537 0.66 0.649838
Target:  5'- cGACCUCgucgaGCUcggGGGUGCgaucgagGCCGCgGGUGGAa -3'
miRNA:   3'- -UUGGAG-----UGG---CCCACG-------UGGCG-CCACUU- -5'
2926 3' -60.6 NC_001493.1 + 14982 0.66 0.649838
Target:  5'- cGACCUCgucgaGCUcggGGGUGCgaucgagGCCGCgGGUGGAa -3'
miRNA:   3'- -UUGGAG-----UGG---CCCACG-------UGGCG-CCACUU- -5'
2926 3' -60.6 NC_001493.1 + 63159 0.66 0.59998
Target:  5'- cGACCgaCACCGuGGUGacUACCGCgacGGUGAAg -3'
miRNA:   3'- -UUGGa-GUGGC-CCAC--GUGGCG---CCACUU- -5'
2926 3' -60.6 NC_001493.1 + 111218 0.67 0.589846
Target:  5'- -cCCUCACCGGGgagGCGa-GaCGGUGGu -3'
miRNA:   3'- uuGGAGUGGCCCa--CGUggC-GCCACUu -5'
2926 3' -60.6 NC_001493.1 + 129804 0.67 0.579742
Target:  5'- uAACCUCACgGGGuUGCuCCGgGGguUGAu -3'
miRNA:   3'- -UUGGAGUGgCCC-ACGuGGCgCC--ACUu -5'
2926 3' -60.6 NC_001493.1 + 14250 0.67 0.579742
Target:  5'- uAACCUCACgGGGuUGCuCCGgGGguUGAu -3'
miRNA:   3'- -UUGGAGUGgCCC-ACGuGGCgCC--ACUu -5'
2926 3' -60.6 NC_001493.1 + 63621 0.68 0.529906
Target:  5'- gGGCaUCGCCGGuGUGgugguCACCGCGGUGc- -3'
miRNA:   3'- -UUGgAGUGGCC-CAC-----GUGGCGCCACuu -5'
2926 3' -60.6 NC_001493.1 + 131241 0.68 0.518167
Target:  5'- aGACC-CuCCGGGccaccuucgauaGCACCGUGGUGAGa -3'
miRNA:   3'- -UUGGaGuGGCCCa-----------CGUGGCGCCACUU- -5'
2926 3' -60.6 NC_001493.1 + 63780 0.68 0.491198
Target:  5'- gGGCgUCGCCGauguGGUGguCACCGCGGUGu- -3'
miRNA:   3'- -UUGgAGUGGC----CCAC--GUGGCGCCACuu -5'
2926 3' -60.6 NC_001493.1 + 63802 0.69 0.463046
Target:  5'- cAACgaCACCGcGaacgGCACCGCGGUGAc -3'
miRNA:   3'- -UUGgaGUGGCcCa---CGUGGCGCCACUu -5'
2926 3' -60.6 NC_001493.1 + 116694 0.69 0.463046
Target:  5'- uGGCUUCAuCCGGaGU-CACCGCGGUGc- -3'
miRNA:   3'- -UUGGAGU-GGCC-CAcGUGGCGCCACuu -5'
2926 3' -60.6 NC_001493.1 + 1139 0.69 0.463046
Target:  5'- uGGCUUCAuCCGGaGU-CACCGCGGUGc- -3'
miRNA:   3'- -UUGGAGU-GGCC-CAcGUGGCGCCACuu -5'
2926 3' -60.6 NC_001493.1 + 1319 0.69 0.435764
Target:  5'- gAGCgUCuCCGcGGaagcggGCACCGCGGUGAc -3'
miRNA:   3'- -UUGgAGuGGC-CCa-----CGUGGCGCCACUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.