miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2926 5' -53 NC_001493.1 + 114027 0.66 0.972971
Target:  5'- uGCU--CCCGUGAUCuccgaACAGGCuaACGa -3'
miRNA:   3'- -UGAauGGGCACUAGug---UGUCCGc-UGC- -5'
2926 5' -53 NC_001493.1 + 69905 0.66 0.960105
Target:  5'- --aUGCCUGUGuUCGCGCGGGguCGAUc -3'
miRNA:   3'- ugaAUGGGCACuAGUGUGUCC--GCUGc -5'
2926 5' -53 NC_001493.1 + 133708 0.66 0.956323
Target:  5'- -aUUGCCCcgaGUG-UgGCGCAGGgGGCGa -3'
miRNA:   3'- ugAAUGGG---CACuAgUGUGUCCgCUGC- -5'
2926 5' -53 NC_001493.1 + 134070 0.67 0.952303
Target:  5'- ---gGCCCcucacgGUGGcCACGCGGGUGugGg -3'
miRNA:   3'- ugaaUGGG------CACUaGUGUGUCCGCugC- -5'
2926 5' -53 NC_001493.1 + 108702 0.67 0.952303
Target:  5'- ---aGCCuCG-GGUCcauCGCAGGCGAUGg -3'
miRNA:   3'- ugaaUGG-GCaCUAGu--GUGUCCGCUGC- -5'
2926 5' -53 NC_001493.1 + 18515 0.67 0.952303
Target:  5'- ---gGCCCcucacgGUGGcCACGCGGGUGugGg -3'
miRNA:   3'- ugaaUGGG------CACUaGUGUGUCCGCugC- -5'
2926 5' -53 NC_001493.1 + 63242 0.67 0.952303
Target:  5'- aGCgaacgACaCCGUGGUgaccacCGCACcGGCGACGc -3'
miRNA:   3'- -UGaa---UG-GGCACUA------GUGUGuCCGCUGC- -5'
2926 5' -53 NC_001493.1 + 95476 0.67 0.951887
Target:  5'- ---gACCCGUucaacccGAUCGgGgAGGUGACGg -3'
miRNA:   3'- ugaaUGGGCA-------CUAGUgUgUCCGCUGC- -5'
2926 5' -53 NC_001493.1 + 34254 0.67 0.948042
Target:  5'- ---cGCCCGUGAUCgaGCACguGGGUGGg- -3'
miRNA:   3'- ugaaUGGGCACUAG--UGUG--UCCGCUgc -5'
2926 5' -53 NC_001493.1 + 70850 0.67 0.93378
Target:  5'- ----gUCCGUGAUCACACccgauGGCGuguCGa -3'
miRNA:   3'- ugaauGGGCACUAGUGUGu----CCGCu--GC- -5'
2926 5' -53 NC_001493.1 + 44576 0.68 0.928527
Target:  5'- uACUacCCCGccgcgGAcaUCGCGCGGGCgGACGa -3'
miRNA:   3'- -UGAauGGGCa----CU--AGUGUGUCCG-CUGC- -5'
2926 5' -53 NC_001493.1 + 119334 0.68 0.928527
Target:  5'- uGCgaACCgGUauUCGCGgGGGCGGCGg -3'
miRNA:   3'- -UGaaUGGgCAcuAGUGUgUCCGCUGC- -5'
2926 5' -53 NC_001493.1 + 3780 0.68 0.928527
Target:  5'- uGCgaACCgGUauUCGCGgGGGCGGCGg -3'
miRNA:   3'- -UGaaUGGgCAcuAGUGUgUCCGCUGC- -5'
2926 5' -53 NC_001493.1 + 97669 0.68 0.923023
Target:  5'- cGC-UACCCaUGAUCgucuccACGCGGGUGACc -3'
miRNA:   3'- -UGaAUGGGcACUAG------UGUGUCCGCUGc -5'
2926 5' -53 NC_001493.1 + 133664 0.68 0.921892
Target:  5'- ---gACCCGUGAgaauaggaagagCGCGCAgauGGUGACGu -3'
miRNA:   3'- ugaaUGGGCACUa-----------GUGUGU---CCGCUGC- -5'
2926 5' -53 NC_001493.1 + 18110 0.68 0.921892
Target:  5'- ---gACCCGUGAgaauaggaagagCGCGCAgauGGUGACGu -3'
miRNA:   3'- ugaaUGGGCACUa-----------GUGUGU---CCGCUGC- -5'
2926 5' -53 NC_001493.1 + 112504 0.68 0.917267
Target:  5'- ---aGCCCGUGAggaUACGgGGGCGcCGa -3'
miRNA:   3'- ugaaUGGGCACUa--GUGUgUCCGCuGC- -5'
2926 5' -53 NC_001493.1 + 65336 0.68 0.911261
Target:  5'- cGCUcaACCgcggCGUGccguUCGCGCGGGCGAUGg -3'
miRNA:   3'- -UGAa-UGG----GCACu---AGUGUGUCCGCUGC- -5'
2926 5' -53 NC_001493.1 + 17627 0.68 0.911261
Target:  5'- ----cCCCGgGAUCGCuCGGGUGGCGc -3'
miRNA:   3'- ugaauGGGCaCUAGUGuGUCCGCUGC- -5'
2926 5' -53 NC_001493.1 + 133181 0.68 0.911261
Target:  5'- ----cCCCGgGAUCGCuCGGGUGGCGc -3'
miRNA:   3'- ugaauGGGCaCUAGUGuGUCCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.