miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29260 3' -53.4 NC_006150.1 + 152097 0.66 0.987389
Target:  5'- aGCAGCcaCCuCAUUgcCAGCCAUCGCa -3'
miRNA:   3'- aCGUUGc-GGcGUAGacGUUGGUAGCG- -5'
29260 3' -53.4 NC_006150.1 + 8049 0.66 0.987389
Target:  5'- aGCAuuaucUGCUGCAUCUGCuACCGa--- -3'
miRNA:   3'- aCGUu----GCGGCGUAGACGuUGGUagcg -5'
29260 3' -53.4 NC_006150.1 + 88078 0.66 0.987389
Target:  5'- gGaCGGCGCCGCGgaCUGC-GCCAcCGa -3'
miRNA:   3'- aC-GUUGCGGCGUa-GACGuUGGUaGCg -5'
29260 3' -53.4 NC_006150.1 + 191860 0.66 0.987235
Target:  5'- --aAACGCCGCAUCcaucGCAugacuucuuccacAUCGUCGUu -3'
miRNA:   3'- acgUUGCGGCGUAGa---CGU-------------UGGUAGCG- -5'
29260 3' -53.4 NC_006150.1 + 176558 0.66 0.986922
Target:  5'- uUGCAACuaGUcucugguuuaaagaCGUAUCUGCGGCUAUCa- -3'
miRNA:   3'- -ACGUUG--CG--------------GCGUAGACGUUGGUAGcg -5'
29260 3' -53.4 NC_006150.1 + 136165 0.66 0.986922
Target:  5'- aGCuGugGCCGCcagGUUUGCAuaACCGccucgaugcacgacUCGCa -3'
miRNA:   3'- aCG-UugCGGCG---UAGACGU--UGGU--------------AGCG- -5'
29260 3' -53.4 NC_006150.1 + 74449 0.66 0.985781
Target:  5'- --uGAUG-UGCAUgUGCAGCCgAUCGCg -3'
miRNA:   3'- acgUUGCgGCGUAgACGUUGG-UAGCG- -5'
29260 3' -53.4 NC_006150.1 + 59373 0.66 0.985781
Target:  5'- cUGCAuCGUCGC--CUGCGcACCAUUGg -3'
miRNA:   3'- -ACGUuGCGGCGuaGACGU-UGGUAGCg -5'
29260 3' -53.4 NC_006150.1 + 116651 0.66 0.984021
Target:  5'- cUGUGAUGgCGCA---GCAGCCGUUGUa -3'
miRNA:   3'- -ACGUUGCgGCGUagaCGUUGGUAGCG- -5'
29260 3' -53.4 NC_006150.1 + 91764 0.66 0.984021
Target:  5'- aGCAGCGCgUGCAUgCUGgGAgCGUUGa -3'
miRNA:   3'- aCGUUGCG-GCGUA-GACgUUgGUAGCg -5'
29260 3' -53.4 NC_006150.1 + 216549 0.66 0.984021
Target:  5'- aUGC--CGCCGUGUC-GCGcUCGUCGCc -3'
miRNA:   3'- -ACGuuGCGGCGUAGaCGUuGGUAGCG- -5'
29260 3' -53.4 NC_006150.1 + 152485 0.66 0.984021
Target:  5'- aUGCGGCGaCGC-UCUGCGcgGCgGUgGCc -3'
miRNA:   3'- -ACGUUGCgGCGuAGACGU--UGgUAgCG- -5'
29260 3' -53.4 NC_006150.1 + 114259 0.66 0.984021
Target:  5'- aGCAAgGCuUGCua-UGCG-CCGUCGCc -3'
miRNA:   3'- aCGUUgCG-GCGuagACGUuGGUAGCG- -5'
29260 3' -53.4 NC_006150.1 + 81168 0.66 0.984021
Target:  5'- aUGaAugGCCGCGcccacccccUCUGCcGCCGcCGCc -3'
miRNA:   3'- -ACgUugCGGCGU---------AGACGuUGGUaGCG- -5'
29260 3' -53.4 NC_006150.1 + 220163 0.66 0.983836
Target:  5'- cUGCAGugugaccgauagcUGCCGCAgCUGCGGCUG-CGUu -3'
miRNA:   3'- -ACGUU-------------GCGGCGUaGACGUUGGUaGCG- -5'
29260 3' -53.4 NC_006150.1 + 125461 0.66 0.9821
Target:  5'- cGCGACGCCGgc-CUG--ACgGUCGCg -3'
miRNA:   3'- aCGUUGCGGCguaGACguUGgUAGCG- -5'
29260 3' -53.4 NC_006150.1 + 114013 0.66 0.9821
Target:  5'- gGCGACGgCGCAUa-GCAaGCCuugcucuucgggGUCGCg -3'
miRNA:   3'- aCGUUGCgGCGUAgaCGU-UGG------------UAGCG- -5'
29260 3' -53.4 NC_006150.1 + 70054 0.66 0.9821
Target:  5'- gGCAGCGucaucgaacucCCGC-UCUGguGCUuauGUCGCc -3'
miRNA:   3'- aCGUUGC-----------GGCGuAGACguUGG---UAGCG- -5'
29260 3' -53.4 NC_006150.1 + 55941 0.66 0.980011
Target:  5'- uUGCccacacccGCGuuGguUCUGCAaACCGUgCGCa -3'
miRNA:   3'- -ACGu-------UGCggCguAGACGU-UGGUA-GCG- -5'
29260 3' -53.4 NC_006150.1 + 46753 0.66 0.980011
Target:  5'- cUGUaAGCGCaCGCAUCUGCGuuagGCCcuGUCuGUa -3'
miRNA:   3'- -ACG-UUGCG-GCGUAGACGU----UGG--UAG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.