miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29260 5' -53.5 NC_006150.1 + 118663 0.66 0.984495
Target:  5'- aCGACGGuaaCUUUGUCC--UCAGUCCCGa -3'
miRNA:   3'- -GCUGCUg--GAAAUGGGuaAGUCGGGGC- -5'
29260 5' -53.5 NC_006150.1 + 88827 0.66 0.984495
Target:  5'- aGGCGACCUggAUgCGggucgCGGCUCCa -3'
miRNA:   3'- gCUGCUGGAaaUGgGUaa---GUCGGGGc -5'
29260 5' -53.5 NC_006150.1 + 90647 0.66 0.984495
Target:  5'- aGAUGGCCgcgACCCAgUCGGgCUCu -3'
miRNA:   3'- gCUGCUGGaaaUGGGUaAGUCgGGGc -5'
29260 5' -53.5 NC_006150.1 + 203567 0.67 0.982646
Target:  5'- aGACGAUaggUACCCA--CGGCaCCCa -3'
miRNA:   3'- gCUGCUGgaaAUGGGUaaGUCG-GGGc -5'
29260 5' -53.5 NC_006150.1 + 187485 0.67 0.976101
Target:  5'- aGGCcGCCaUUGCCCGUUUacggaccagGGUCCCGc -3'
miRNA:   3'- gCUGcUGGaAAUGGGUAAG---------UCGGGGC- -5'
29260 5' -53.5 NC_006150.1 + 114358 0.67 0.973563
Target:  5'- aCGugGACUUUcaGCCCAgcgaccucCAGCaCCCGu -3'
miRNA:   3'- -GCugCUGGAAa-UGGGUaa------GUCG-GGGC- -5'
29260 5' -53.5 NC_006150.1 + 8506 0.7 0.926811
Target:  5'- -cACGACCUcgUUGCCCAUUguGagaauCCCGa -3'
miRNA:   3'- gcUGCUGGA--AAUGGGUAAguCg----GGGC- -5'
29260 5' -53.5 NC_006150.1 + 149018 0.7 0.926811
Target:  5'- gGACGcCCUgacCCCAgcaUCAGCuCCCGc -3'
miRNA:   3'- gCUGCuGGAaauGGGUa--AGUCG-GGGC- -5'
29260 5' -53.5 NC_006150.1 + 161491 0.71 0.897701
Target:  5'- gGugGcCCaUUGCCCAUUCccacGCCCCc -3'
miRNA:   3'- gCugCuGGaAAUGGGUAAGu---CGGGGc -5'
29260 5' -53.5 NC_006150.1 + 182586 0.71 0.863016
Target:  5'- -cACGGCCacUugCCAUuuUCAGCCCCc -3'
miRNA:   3'- gcUGCUGGaaAugGGUA--AGUCGGGGc -5'
29260 5' -53.5 NC_006150.1 + 56678 0.74 0.760862
Target:  5'- aCGAagaGACCgugUUGCCUG-UCAGCCCCc -3'
miRNA:   3'- -GCUg--CUGGa--AAUGGGUaAGUCGGGGc -5'
29260 5' -53.5 NC_006150.1 + 219219 1.09 0.008018
Target:  5'- cCGACGACCUUUACCCAUUCAGCCCCGu -3'
miRNA:   3'- -GCUGCUGGAAAUGGGUAAGUCGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.