miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29261 3' -59 NC_006150.1 + 217352 0.66 0.857391
Target:  5'- gCGCAGUCGCCAagagcgcaccGcCCUGcgcuggcgCAGGCAa -3'
miRNA:   3'- -GCGUCGGCGGU----------CaGGACua------GUCCGUc -5'
29261 3' -59 NC_006150.1 + 202939 0.66 0.842115
Target:  5'- aGCAGCCGCCAccUCCUccgCuGGCAc -3'
miRNA:   3'- gCGUCGGCGGUc-AGGAcuaGuCCGUc -5'
29261 3' -59 NC_006150.1 + 83299 0.66 0.834207
Target:  5'- aCGcCGGCCGCCuuaAGaUCCU--UCAGGCGc -3'
miRNA:   3'- -GC-GUCGGCGG---UC-AGGAcuAGUCCGUc -5'
29261 3' -59 NC_006150.1 + 65453 0.66 0.826129
Target:  5'- uGCAGUuuggCGCuCAGUUCgGGUCGGGCu- -3'
miRNA:   3'- gCGUCG----GCG-GUCAGGaCUAGUCCGuc -5'
29261 3' -59 NC_006150.1 + 128475 0.67 0.774469
Target:  5'- aGCAGUgUGCCAGUCCcaguUCGGGguGc -3'
miRNA:   3'- gCGUCG-GCGGUCAGGacu-AGUCCguC- -5'
29261 3' -59 NC_006150.1 + 117129 0.67 0.774469
Target:  5'- aGCGGCUGCCGGUCggcgaUGAUCu-GCAc -3'
miRNA:   3'- gCGUCGGCGGUCAGg----ACUAGucCGUc -5'
29261 3' -59 NC_006150.1 + 102296 0.7 0.660169
Target:  5'- cCGCGGCgGCgAcGUCCUGA-CAcGGCGGc -3'
miRNA:   3'- -GCGUCGgCGgU-CAGGACUaGU-CCGUC- -5'
29261 3' -59 NC_006150.1 + 88769 0.73 0.438758
Target:  5'- uGCAGCCGCCuGUCCcGAUCcagcacugcguccaGGGCu- -3'
miRNA:   3'- gCGUCGGCGGuCAGGaCUAG--------------UCCGuc -5'
29261 3' -59 NC_006150.1 + 88247 0.74 0.424116
Target:  5'- aGCGGCCGCgCAGcCCUGGcgggGGGCGGa -3'
miRNA:   3'- gCGUCGGCG-GUCaGGACUag--UCCGUC- -5'
29261 3' -59 NC_006150.1 + 219439 0.78 0.245847
Target:  5'- uCGCGGgCGUUcccaaacauaagGGUCCUGAUCGGGCAGc -3'
miRNA:   3'- -GCGUCgGCGG------------UCAGGACUAGUCCGUC- -5'
29261 3' -59 NC_006150.1 + 219735 1.08 0.00244
Target:  5'- aCGCAGCCGCCAGUCCUGAUCAGGCAGc -3'
miRNA:   3'- -GCGUCGGCGGUCAGGACUAGUCCGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.