Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29261 | 3' | -59 | NC_006150.1 | + | 219439 | 0.78 | 0.245847 |
Target: 5'- uCGCGGgCGUUcccaaacauaagGGUCCUGAUCGGGCAGc -3' miRNA: 3'- -GCGUCgGCGG------------UCAGGACUAGUCCGUC- -5' |
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29261 | 3' | -59 | NC_006150.1 | + | 217352 | 0.66 | 0.857391 |
Target: 5'- gCGCAGUCGCCAagagcgcaccGcCCUGcgcuggcgCAGGCAa -3' miRNA: 3'- -GCGUCGGCGGU----------CaGGACua------GUCCGUc -5' |
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29261 | 3' | -59 | NC_006150.1 | + | 202939 | 0.66 | 0.842115 |
Target: 5'- aGCAGCCGCCAccUCCUccgCuGGCAc -3' miRNA: 3'- gCGUCGGCGGUc-AGGAcuaGuCCGUc -5' |
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29261 | 3' | -59 | NC_006150.1 | + | 83299 | 0.66 | 0.834207 |
Target: 5'- aCGcCGGCCGCCuuaAGaUCCU--UCAGGCGc -3' miRNA: 3'- -GC-GUCGGCGG---UC-AGGAcuAGUCCGUc -5' |
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29261 | 3' | -59 | NC_006150.1 | + | 128475 | 0.67 | 0.774469 |
Target: 5'- aGCAGUgUGCCAGUCCcaguUCGGGguGc -3' miRNA: 3'- gCGUCG-GCGGUCAGGacu-AGUCCguC- -5' |
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29261 | 3' | -59 | NC_006150.1 | + | 117129 | 0.67 | 0.774469 |
Target: 5'- aGCGGCUGCCGGUCggcgaUGAUCu-GCAc -3' miRNA: 3'- gCGUCGGCGGUCAGg----ACUAGucCGUc -5' |
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29261 | 3' | -59 | NC_006150.1 | + | 88247 | 0.74 | 0.424116 |
Target: 5'- aGCGGCCGCgCAGcCCUGGcgggGGGCGGa -3' miRNA: 3'- gCGUCGGCG-GUCaGGACUag--UCCGUC- -5' |
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29261 | 3' | -59 | NC_006150.1 | + | 219735 | 1.08 | 0.00244 |
Target: 5'- aCGCAGCCGCCAGUCCUGAUCAGGCAGc -3' miRNA: 3'- -GCGUCGGCGGUCAGGACUAGUCCGUC- -5' |
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29261 | 3' | -59 | NC_006150.1 | + | 88769 | 0.73 | 0.438758 |
Target: 5'- uGCAGCCGCCuGUCCcGAUCcagcacugcguccaGGGCu- -3' miRNA: 3'- gCGUCGGCGGuCAGGaCUAG--------------UCCGuc -5' |
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29261 | 3' | -59 | NC_006150.1 | + | 102296 | 0.7 | 0.660169 |
Target: 5'- cCGCGGCgGCgAcGUCCUGA-CAcGGCGGc -3' miRNA: 3'- -GCGUCGgCGgU-CAGGACUaGU-CCGUC- -5' |
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29261 | 3' | -59 | NC_006150.1 | + | 65453 | 0.66 | 0.826129 |
Target: 5'- uGCAGUuuggCGCuCAGUUCgGGUCGGGCu- -3' miRNA: 3'- gCGUCG----GCG-GUCAGGaCUAGUCCGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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