miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29262 3' -64.1 NC_006150.1 + 1901 0.65 0.69553
Target:  5'- gUCGCGGCUACGguuaccgcgcauucCCAGGUCCcGaagGCg -3'
miRNA:   3'- gGGCGCCGGUGC--------------GGUCCAGGaCgg-CG- -5'
29262 3' -64.1 NC_006150.1 + 106600 0.66 0.689054
Target:  5'- cUCUGUGGCCACuCCAGcGgCCUcgagcGUCGCg -3'
miRNA:   3'- -GGGCGCCGGUGcGGUC-CaGGA-----CGGCG- -5'
29262 3' -64.1 NC_006150.1 + 214857 0.66 0.688127
Target:  5'- aCCCcUGGgagaaaccuccuaCUACGgCGGGUgCUGCCGCc -3'
miRNA:   3'- -GGGcGCC-------------GGUGCgGUCCAgGACGGCG- -5'
29262 3' -64.1 NC_006150.1 + 126616 0.66 0.688127
Target:  5'- cUCCG-GGCCugGUUuuucacuGGGUUCUGCCu- -3'
miRNA:   3'- -GGGCgCCGGugCGG-------UCCAGGACGGcg -5'
29262 3' -64.1 NC_006150.1 + 182286 0.66 0.679769
Target:  5'- gCCGgguaacCGGCC-CGcCCAGGUCCaGgUGCg -3'
miRNA:   3'- gGGC------GCCGGuGC-GGUCCAGGaCgGCG- -5'
29262 3' -64.1 NC_006150.1 + 119048 0.66 0.679769
Target:  5'- -gCGUGGCCucauccacuGCuucauCCAGGUgCUGCUGCg -3'
miRNA:   3'- ggGCGCCGG---------UGc----GGUCCAgGACGGCG- -5'
29262 3' -64.1 NC_006150.1 + 1988 0.66 0.670452
Target:  5'- cUCCGCGGUCugGgCugaggcGGUCUgcggUGCCGg -3'
miRNA:   3'- -GGGCGCCGGugCgGu-----CCAGG----ACGGCg -5'
29262 3' -64.1 NC_006150.1 + 221445 0.66 0.670452
Target:  5'- gCCaGCGcGCCACcCCGGaGUgCCUGCCa- -3'
miRNA:   3'- gGG-CGC-CGGUGcGGUC-CA-GGACGGcg -5'
29262 3' -64.1 NC_006150.1 + 65421 0.66 0.670452
Target:  5'- cUCgGCGGCCgugGCGCUGGGg---GCCGUu -3'
miRNA:   3'- -GGgCGCCGG---UGCGGUCCaggaCGGCG- -5'
29262 3' -64.1 NC_006150.1 + 125640 0.66 0.667652
Target:  5'- -aCGUGG-CGCGCCgccaucucccuacgGGGUCCggGUCGCu -3'
miRNA:   3'- ggGCGCCgGUGCGG--------------UCCAGGa-CGGCG- -5'
29262 3' -64.1 NC_006150.1 + 200205 0.66 0.661109
Target:  5'- uUgGCGGCCugGC--GGUCaUUGUCGCu -3'
miRNA:   3'- gGgCGCCGGugCGguCCAG-GACGGCG- -5'
29262 3' -64.1 NC_006150.1 + 218097 0.66 0.661109
Target:  5'- uCCUG-GGUCGCGCuCuGGUCCUcGUCGg -3'
miRNA:   3'- -GGGCgCCGGUGCG-GuCCAGGA-CGGCg -5'
29262 3' -64.1 NC_006150.1 + 207886 0.66 0.651745
Target:  5'- uUCUGCaGUaCugGCCGGG-CC-GCCGCa -3'
miRNA:   3'- -GGGCGcCG-GugCGGUCCaGGaCGGCG- -5'
29262 3' -64.1 NC_006150.1 + 749 0.66 0.646121
Target:  5'- gCCCGCGuguggcgcucgcugcGCCgccuaGCGUCAGGccacccucgCCUGCCuGCg -3'
miRNA:   3'- -GGGCGC---------------CGG-----UGCGGUCCa--------GGACGG-CG- -5'
29262 3' -64.1 NC_006150.1 + 81613 0.66 0.642369
Target:  5'- uCCCGCGaGCaGCGUCuuuucgugGGGUCggucuUUGCCGCc -3'
miRNA:   3'- -GGGCGC-CGgUGCGG--------UCCAG-----GACGGCG- -5'
29262 3' -64.1 NC_006150.1 + 181142 0.66 0.642369
Target:  5'- gCUGUGGCCGCGCCg---CCUGCa-- -3'
miRNA:   3'- gGGCGCCGGUGCGGuccaGGACGgcg -5'
29262 3' -64.1 NC_006150.1 + 113338 0.67 0.632986
Target:  5'- uUCCGCcuuGGCCAa-CCAGGUCaaGUCGUc -3'
miRNA:   3'- -GGGCG---CCGGUgcGGUCCAGgaCGGCG- -5'
29262 3' -64.1 NC_006150.1 + 203894 0.67 0.623603
Target:  5'- gCCCguaGCGcGCCAacuCGuCCAGGUgCUcaGCCGCc -3'
miRNA:   3'- -GGG---CGC-CGGU---GC-GGUCCAgGA--CGGCG- -5'
29262 3' -64.1 NC_006150.1 + 1981 0.67 0.614225
Target:  5'- cUCgGCGGCCACgGCCucG-CCUGCaGCu -3'
miRNA:   3'- -GGgCGCCGGUG-CGGucCaGGACGgCG- -5'
29262 3' -64.1 NC_006150.1 + 138621 0.67 0.604858
Target:  5'- cCCCGCGcaccaucaggauGuCCAUGCCGGGaggaUCUgaagggGCCGCc -3'
miRNA:   3'- -GGGCGC------------C-GGUGCGGUCC----AGGa-----CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.