miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29262 5' -53.4 NC_006150.1 + 130022 0.66 0.981196
Target:  5'- gUGUGAC-GUCGgUCACGGCCgCGGGa -3'
miRNA:   3'- gACGUUGaCAGUgAGUGUCGGgGUUU- -5'
29262 5' -53.4 NC_006150.1 + 106500 0.66 0.976603
Target:  5'- -cGCGGCUGUUGCcgucagCugAGCCCgCAAc -3'
miRNA:   3'- gaCGUUGACAGUGa-----GugUCGGG-GUUu -5'
29262 5' -53.4 NC_006150.1 + 195031 0.66 0.976603
Target:  5'- uCUGCAugUuGUCAaaCACAGCCgCGGc -3'
miRNA:   3'- -GACGUugA-CAGUgaGUGUCGGgGUUu -5'
29262 5' -53.4 NC_006150.1 + 70981 0.66 0.976603
Target:  5'- uUGCGGCUGUUGCugugguggugUCGCAacGCCgCCAGAc -3'
miRNA:   3'- gACGUUGACAGUG----------AGUGU--CGG-GGUUU- -5'
29262 5' -53.4 NC_006150.1 + 113658 0.66 0.971237
Target:  5'- aUGCGGCUGgcgagGCccCGCGGUCCCGAAa -3'
miRNA:   3'- gACGUUGACag---UGa-GUGUCGGGGUUU- -5'
29262 5' -53.4 NC_006150.1 + 206743 0.67 0.968246
Target:  5'- -gGUGACUGUUACgagaguaACAGCCaCCAGGg -3'
miRNA:   3'- gaCGUUGACAGUGag-----UGUCGG-GGUUU- -5'
29262 5' -53.4 NC_006150.1 + 113387 0.67 0.967307
Target:  5'- -gGCAACUG-UACUuuaucuccuccaaaCACAGCCUCAAu -3'
miRNA:   3'- gaCGUUGACaGUGA--------------GUGUCGGGGUUu -5'
29262 5' -53.4 NC_006150.1 + 117526 0.67 0.966348
Target:  5'- cCUGCGGCUcGUCACcCGCgugucuucccuaccaGGCCUCAAc -3'
miRNA:   3'- -GACGUUGA-CAGUGaGUG---------------UCGGGGUUu -5'
29262 5' -53.4 NC_006150.1 + 118488 0.67 0.965039
Target:  5'- uCUGCAGCUGggagagCACgcCGUAGCCCUGGAa -3'
miRNA:   3'- -GACGUUGACa-----GUGa-GUGUCGGGGUUU- -5'
29262 5' -53.4 NC_006150.1 + 114125 0.67 0.95796
Target:  5'- gUGaGACUGUCGCUCaACAuuuucGCCCUGAAa -3'
miRNA:   3'- gACgUUGACAGUGAG-UGU-----CGGGGUUU- -5'
29262 5' -53.4 NC_006150.1 + 116889 0.67 0.954076
Target:  5'- -gGCuGCUG-CGCcaUCACAGCaCCCAAGa -3'
miRNA:   3'- gaCGuUGACaGUG--AGUGUCG-GGGUUU- -5'
29262 5' -53.4 NC_006150.1 + 171819 0.68 0.945599
Target:  5'- uUGCuggcuGCUGUCGCUCACGGgCUg--- -3'
miRNA:   3'- gACGu----UGACAGUGAGUGUCgGGguuu -5'
29262 5' -53.4 NC_006150.1 + 111320 0.68 0.931063
Target:  5'- -gGCAGCUGUCAgUCGCaaaAGCaCUCGAc -3'
miRNA:   3'- gaCGUUGACAGUgAGUG---UCG-GGGUUu -5'
29262 5' -53.4 NC_006150.1 + 106046 0.71 0.843047
Target:  5'- -gGCAguuauuccggGCUGUCACUCucCAGCCgCCGGGa -3'
miRNA:   3'- gaCGU----------UGACAGUGAGu-GUCGG-GGUUU- -5'
29262 5' -53.4 NC_006150.1 + 171175 0.71 0.83473
Target:  5'- gCUGCAACUGUaaggacuUUCGCAGCCUgAGGg -3'
miRNA:   3'- -GACGUUGACAgu-----GAGUGUCGGGgUUU- -5'
29262 5' -53.4 NC_006150.1 + 75505 0.72 0.771651
Target:  5'- -cGCAGCUcUCAUugagCGCGGCCCCAGu -3'
miRNA:   3'- gaCGUUGAcAGUGa---GUGUCGGGGUUu -5'
29262 5' -53.4 NC_006150.1 + 219973 1.06 0.008801
Target:  5'- gCUGCAACUGUCACUCACAGCCCCAAAu -3'
miRNA:   3'- -GACGUUGACAGUGAGUGUCGGGGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.