miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29263 3' -56.2 NC_006150.1 + 149773 0.66 0.964646
Target:  5'- -aCAGUCuGGAGauCACUCG-CUCGCu -3'
miRNA:   3'- ggGUCAGcCCUUguGUGAGCcGAGCG- -5'
29263 3' -56.2 NC_006150.1 + 204445 0.66 0.964646
Target:  5'- cUCCGacaGGcGAACAUugACUCGGUUCGUg -3'
miRNA:   3'- -GGGUcagCC-CUUGUG--UGAGCCGAGCG- -5'
29263 3' -56.2 NC_006150.1 + 32244 0.66 0.964646
Target:  5'- aCCAG-CGGGuuUAUGCUgcGCUCGCu -3'
miRNA:   3'- gGGUCaGCCCuuGUGUGAgcCGAGCG- -5'
29263 3' -56.2 NC_006150.1 + 88475 0.66 0.964646
Target:  5'- cUCCGacGUCGGGuAgGCAgcCGGCUUGCc -3'
miRNA:   3'- -GGGU--CAGCCCuUgUGUgaGCCGAGCG- -5'
29263 3' -56.2 NC_006150.1 + 88515 0.66 0.96433
Target:  5'- gCCCAGcCGaGcGCACGCUCcgccccccgccagGGCUgCGCg -3'
miRNA:   3'- -GGGUCaGCcCuUGUGUGAG-------------CCGA-GCG- -5'
29263 3' -56.2 NC_006150.1 + 184077 0.66 0.961392
Target:  5'- gUCAGUgCGGGGACugGCgggGGCaUGCc -3'
miRNA:   3'- gGGUCA-GCCCUUGugUGag-CCGaGCG- -5'
29263 3' -56.2 NC_006150.1 + 117136 0.66 0.957935
Target:  5'- gCCGGUCGGcGAugaucuGCACGCcuucgCGGUUCcgagGCa -3'
miRNA:   3'- gGGUCAGCC-CU------UGUGUGa----GCCGAG----CG- -5'
29263 3' -56.2 NC_006150.1 + 168545 0.66 0.954273
Target:  5'- aCCCAGcCGGGca------CGGCUCGCa -3'
miRNA:   3'- -GGGUCaGCCCuugugugaGCCGAGCG- -5'
29263 3' -56.2 NC_006150.1 + 3670 0.66 0.950401
Target:  5'- uCCCAGcgagccUCGGaGAAUACACUUGGga-GCc -3'
miRNA:   3'- -GGGUC------AGCC-CUUGUGUGAGCCgagCG- -5'
29263 3' -56.2 NC_006150.1 + 139462 0.67 0.946316
Target:  5'- gCCGGgugCGGGAauuGCGCGaucuccucuCUCGGUaugCGCg -3'
miRNA:   3'- gGGUCa--GCCCU---UGUGU---------GAGCCGa--GCG- -5'
29263 3' -56.2 NC_006150.1 + 131818 0.67 0.946316
Target:  5'- -aCAGUUGGGGAUGCGC-CGaGC-CGUa -3'
miRNA:   3'- ggGUCAGCCCUUGUGUGaGC-CGaGCG- -5'
29263 3' -56.2 NC_006150.1 + 88260 0.67 0.946316
Target:  5'- cCCUGG-CGGGGGgcggagcgUGCGCUCGGCUgGg -3'
miRNA:   3'- -GGGUCaGCCCUU--------GUGUGAGCCGAgCg -5'
29263 3' -56.2 NC_006150.1 + 2257 0.67 0.942015
Target:  5'- uUCAGcuucUCGGGcACACGCgCGGUUCaGCu -3'
miRNA:   3'- gGGUC----AGCCCuUGUGUGaGCCGAG-CG- -5'
29263 3' -56.2 NC_006150.1 + 82341 0.67 0.937498
Target:  5'- gCCAGU----AACACGCUCGGaUCGCa -3'
miRNA:   3'- gGGUCAgcccUUGUGUGAGCCgAGCG- -5'
29263 3' -56.2 NC_006150.1 + 150237 0.67 0.927804
Target:  5'- gCCAG-CGGGGugGCGUUCGGCacccUGCc -3'
miRNA:   3'- gGGUCaGCCCUugUGUGAGCCGa---GCG- -5'
29263 3' -56.2 NC_006150.1 + 117668 0.67 0.922628
Target:  5'- gCCGGUCacgauucgGGGggUGCACaggguggCGGuCUCGCc -3'
miRNA:   3'- gGGUCAG--------CCCuuGUGUGa------GCC-GAGCG- -5'
29263 3' -56.2 NC_006150.1 + 169008 0.67 0.922628
Target:  5'- gUCAGUCGGGGGCACGgaagGGUgaCGCg -3'
miRNA:   3'- gGGUCAGCCCUUGUGUgag-CCGa-GCG- -5'
29263 3' -56.2 NC_006150.1 + 82920 0.67 0.922628
Target:  5'- cCCCugcuGUCGGGGAgGCgguagccaACUCGGUggGUg -3'
miRNA:   3'- -GGGu---CAGCCCUUgUG--------UGAGCCGagCG- -5'
29263 3' -56.2 NC_006150.1 + 95335 0.68 0.89973
Target:  5'- aCCAGUaagGGGAACACACa-GuGCUCa- -3'
miRNA:   3'- gGGUCAg--CCCUUGUGUGagC-CGAGcg -5'
29263 3' -56.2 NC_006150.1 + 88618 0.69 0.873424
Target:  5'- aCCCGGccaaccCGGGGAC-CGCaCaGCUCGCa -3'
miRNA:   3'- -GGGUCa-----GCCCUUGuGUGaGcCGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.