miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29263 5' -54.8 NC_006150.1 + 136346 0.66 0.977239
Target:  5'- cGGCGGCcuCGaUAucuAGCGCCGGCgCGGc -3'
miRNA:   3'- uCCGUCGu-GCcAUu--UUGCGGCUG-GCU- -5'
29263 5' -54.8 NC_006150.1 + 92296 0.66 0.977239
Target:  5'- aGGGCAGCGaGGUAAGAgGagaCGACg-- -3'
miRNA:   3'- -UCCGUCGUgCCAUUUUgCg--GCUGgcu -5'
29263 5' -54.8 NC_006150.1 + 191290 0.66 0.974793
Target:  5'- gAGcGCAGCccgaauagcgugGCGGUcAAACaaCGACCGAg -3'
miRNA:   3'- -UC-CGUCG------------UGCCAuUUUGcgGCUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 88277 0.66 0.974793
Target:  5'- gGGGUAGCGCcagcGGAACGCCGcCCc- -3'
miRNA:   3'- -UCCGUCGUGcca-UUUUGCGGCuGGcu -5'
29263 5' -54.8 NC_006150.1 + 1972 0.66 0.972162
Target:  5'- gAGGCGGUcuGCGGUGccgguGCGCauaucguagCGGCUGAu -3'
miRNA:   3'- -UCCGUCG--UGCCAUuu---UGCG---------GCUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 75469 0.66 0.972162
Target:  5'- uGGCGGCAaugGGUAGAcagggcaucAUGCCGuucaccacGCCGGu -3'
miRNA:   3'- uCCGUCGUg--CCAUUU---------UGCGGC--------UGGCU- -5'
29263 5' -54.8 NC_006150.1 + 135892 0.66 0.969338
Target:  5'- -cGCcGCGCGG-AAAcuuCGCCGACCa- -3'
miRNA:   3'- ucCGuCGUGCCaUUUu--GCGGCUGGcu -5'
29263 5' -54.8 NC_006150.1 + 147355 0.66 0.966315
Target:  5'- gAGG-GGCACGGcAAAA-GCCGcgGCCGAg -3'
miRNA:   3'- -UCCgUCGUGCCaUUUUgCGGC--UGGCU- -5'
29263 5' -54.8 NC_006150.1 + 88075 0.66 0.966315
Target:  5'- cGGCGcCGCGGacu-GCGCC-ACCGAg -3'
miRNA:   3'- uCCGUcGUGCCauuuUGCGGcUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 149968 0.66 0.964404
Target:  5'- aGGGCGGCGCgaccugcccgggcagGGUGccGAACGCC-ACCc- -3'
miRNA:   3'- -UCCGUCGUG---------------CCAU--UUUGCGGcUGGcu -5'
29263 5' -54.8 NC_006150.1 + 13233 0.66 0.963088
Target:  5'- aAGGgAGCAgaUGGUAc-ACGCCaGACCGc -3'
miRNA:   3'- -UCCgUCGU--GCCAUuuUGCGG-CUGGCu -5'
29263 5' -54.8 NC_006150.1 + 88691 0.66 0.963088
Target:  5'- aGGGCGGCcCGGac-GACGUgGAgCCGGa -3'
miRNA:   3'- -UCCGUCGuGCCauuUUGCGgCU-GGCU- -5'
29263 5' -54.8 NC_006150.1 + 2247 0.67 0.961052
Target:  5'- cGGGCAcacGCGCGGUucAGcugcaggcgagggccGugGCCG-CCGAg -3'
miRNA:   3'- -UCCGU---CGUGCCA--UU---------------UugCGGCuGGCU- -5'
29263 5' -54.8 NC_006150.1 + 152161 0.67 0.959652
Target:  5'- cGGCAgGUGCGGUGccGCGaUCGACgGAu -3'
miRNA:   3'- uCCGU-CGUGCCAUuuUGC-GGCUGgCU- -5'
29263 5' -54.8 NC_006150.1 + 54876 0.67 0.959652
Target:  5'- gAGGCGGCAUGcGUu--AUGCuuaCGACUGAc -3'
miRNA:   3'- -UCCGUCGUGC-CAuuuUGCG---GCUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 51849 0.67 0.959652
Target:  5'- uGGCAgGCAUGGUGAAA-GCCuGuCUGAg -3'
miRNA:   3'- uCCGU-CGUGCCAUUUUgCGG-CuGGCU- -5'
29263 5' -54.8 NC_006150.1 + 92450 0.67 0.956002
Target:  5'- -aGCGGCgaggagGCGGUGAccguguCGCCGGCCa- -3'
miRNA:   3'- ucCGUCG------UGCCAUUuu----GCGGCUGGcu -5'
29263 5' -54.8 NC_006150.1 + 206777 0.67 0.952134
Target:  5'- gAGGCGGCaaaaACGGUc--ACGCCGAacaagccaCUGAa -3'
miRNA:   3'- -UCCGUCG----UGCCAuuuUGCGGCU--------GGCU- -5'
29263 5' -54.8 NC_006150.1 + 75335 0.67 0.952134
Target:  5'- uGGaucuGGUGCGG-AAAACGUCGugCGAa -3'
miRNA:   3'- uCCg---UCGUGCCaUUUUGCGGCugGCU- -5'
29263 5' -54.8 NC_006150.1 + 132413 0.67 0.943728
Target:  5'- aAGGCGGCucggaccuAUGGgcuGGCGgUGGCCGAg -3'
miRNA:   3'- -UCCGUCG--------UGCCauuUUGCgGCUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.