miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29263 5' -54.8 NC_006150.1 + 220083 1.09 0.005468
Target:  5'- aAGGCAGCACGGUAAAACGCCGACCGAa -3'
miRNA:   3'- -UCCGUCGUGCCAUUUUGCGGCUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 130653 0.78 0.427445
Target:  5'- cAGGCuGcCACGGgcGacagauucugcaGACGCCGACCGAg -3'
miRNA:   3'- -UCCGuC-GUGCCauU------------UUGCGGCUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 171648 0.77 0.517636
Target:  5'- uGGUGGCACGGgaaugcucCGCCGACUGAu -3'
miRNA:   3'- uCCGUCGUGCCauuuu---GCGGCUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 119795 0.74 0.638617
Target:  5'- -cGCAGCGCGGUAGAGCGC--GCCa- -3'
miRNA:   3'- ucCGUCGUGCCAUUUUGCGgcUGGcu -5'
29263 5' -54.8 NC_006150.1 + 183731 0.74 0.638617
Target:  5'- uGGCAGCGgGGcAGGACGCC-ACUGAg -3'
miRNA:   3'- uCCGUCGUgCCaUUUUGCGGcUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 83279 0.74 0.648673
Target:  5'- uGGCcGCuaACGGUGcgauGACGCCGGCCGc -3'
miRNA:   3'- uCCGuCG--UGCCAUu---UUGCGGCUGGCu -5'
29263 5' -54.8 NC_006150.1 + 113859 0.73 0.70846
Target:  5'- gGGGCGGCAUGGUuuucagggcgAAAAUGuuGAgCGAc -3'
miRNA:   3'- -UCCGUCGUGCCA----------UUUUGCggCUgGCU- -5'
29263 5' -54.8 NC_006150.1 + 202867 0.73 0.718255
Target:  5'- uGGCAGCGCGGgcaccUGGAACGCgGGCg-- -3'
miRNA:   3'- uCCGUCGUGCC-----AUUUUGCGgCUGgcu -5'
29263 5' -54.8 NC_006150.1 + 206902 0.72 0.734739
Target:  5'- gAGGCaucuccaaccucucGGCAuCGGagagagccaagcUGAAACGCCGGCCGGc -3'
miRNA:   3'- -UCCG--------------UCGU-GCC------------AUUUUGCGGCUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 108207 0.72 0.737623
Target:  5'- cGGUcuuGUugGGcAAcACGCCGACCGAg -3'
miRNA:   3'- uCCGu--CGugCCaUUuUGCGGCUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 85899 0.72 0.765987
Target:  5'- uGGCGGCGCuGUGu-ACGgCGGCCGGu -3'
miRNA:   3'- uCCGUCGUGcCAUuuUGCgGCUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 135931 0.72 0.784337
Target:  5'- uGGCGGCcacagcugACGGUGAAgaGCGCCagcagagucugGACCGGc -3'
miRNA:   3'- uCCGUCG--------UGCCAUUU--UGCGG-----------CUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 215338 0.71 0.802158
Target:  5'- aAGGcCAGCugGGUGGAACauuCCaGACCGu -3'
miRNA:   3'- -UCC-GUCGugCCAUUUUGc--GG-CUGGCu -5'
29263 5' -54.8 NC_006150.1 + 45031 0.71 0.827754
Target:  5'- uGGCGaCACGGcauuauaacGAAACGCCGGCUGGu -3'
miRNA:   3'- uCCGUcGUGCCa--------UUUUGCGGCUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 188711 0.7 0.859446
Target:  5'- aGGGCGGUACGGUAu-ACG-UGGCaCGAa -3'
miRNA:   3'- -UCCGUCGUGCCAUuuUGCgGCUG-GCU- -5'
29263 5' -54.8 NC_006150.1 + 28389 0.7 0.866889
Target:  5'- -uGCAGCuuGGUgGAGGCGCUGGCCu- -3'
miRNA:   3'- ucCGUCGugCCA-UUUUGCGGCUGGcu -5'
29263 5' -54.8 NC_006150.1 + 998 0.69 0.881157
Target:  5'- uAGGCGGCGCaGcGAGcgccacACGCgGGCCGGg -3'
miRNA:   3'- -UCCGUCGUGcCaUUU------UGCGgCUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 107691 0.69 0.881157
Target:  5'- cGGCcGCugGG-GGAGCGaCGGCCGGg -3'
miRNA:   3'- uCCGuCGugCCaUUUUGCgGCUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 88290 0.69 0.894569
Target:  5'- uGGGCGGCACGG--AAGC-CUGGCUGc -3'
miRNA:   3'- -UCCGUCGUGCCauUUUGcGGCUGGCu -5'
29263 5' -54.8 NC_006150.1 + 193459 0.69 0.899055
Target:  5'- -aGCAGCACGGgGAcgauaaucaggauaAACGCCGGCUc- -3'
miRNA:   3'- ucCGUCGUGCCaUU--------------UUGCGGCUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.