miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29263 5' -54.8 NC_006150.1 + 122316 0.68 0.939185
Target:  5'- cGGaCGGCACGGUagugccacGAAACGUgGugUGGc -3'
miRNA:   3'- uCC-GUCGUGCCA--------UUUUGCGgCugGCU- -5'
29263 5' -54.8 NC_006150.1 + 843 0.68 0.938718
Target:  5'- cGGCGGUguagACGGUGuggccgcGAGCGCUGagucaGCCGGg -3'
miRNA:   3'- uCCGUCG----UGCCAU-------UUUGCGGC-----UGGCU- -5'
29263 5' -54.8 NC_006150.1 + 168363 0.68 0.934414
Target:  5'- uGGgAGCACGGagugguUGCCGGCCu- -3'
miRNA:   3'- uCCgUCGUGCCauuuu-GCGGCUGGcu -5'
29263 5' -54.8 NC_006150.1 + 118181 0.68 0.929411
Target:  5'- cAGGUuuuCACGGagcGAGGCguGCCGACCGAc -3'
miRNA:   3'- -UCCGuc-GUGCCa--UUUUG--CGGCUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 88347 0.68 0.924178
Target:  5'- gGGGCGGCGCaugcAGGACGCCGuCCc- -3'
miRNA:   3'- -UCCGUCGUGcca-UUUUGCGGCuGGcu -5'
29263 5' -54.8 NC_006150.1 + 87832 0.68 0.913019
Target:  5'- cGGUGGCGCaGUccgcGGCGCCGuCCGGg -3'
miRNA:   3'- uCCGUCGUGcCAuu--UUGCGGCuGGCU- -5'
29263 5' -54.8 NC_006150.1 + 107261 0.69 0.907095
Target:  5'- uGGCuGUGCGGcAGAuuGCGCCG-CCGGc -3'
miRNA:   3'- uCCGuCGUGCCaUUU--UGCGGCuGGCU- -5'
29263 5' -54.8 NC_006150.1 + 8331 0.69 0.900944
Target:  5'- aGGGCGGCACuGacu-GCGCUGGCCc- -3'
miRNA:   3'- -UCCGUCGUGcCauuuUGCGGCUGGcu -5'
29263 5' -54.8 NC_006150.1 + 193459 0.69 0.899055
Target:  5'- -aGCAGCACGGgGAcgauaaucaggauaAACGCCGGCUc- -3'
miRNA:   3'- ucCGUCGUGCCaUU--------------UUGCGGCUGGcu -5'
29263 5' -54.8 NC_006150.1 + 88290 0.69 0.894569
Target:  5'- uGGGCGGCACGG--AAGC-CUGGCUGc -3'
miRNA:   3'- -UCCGUCGUGCCauUUUGcGGCUGGCu -5'
29263 5' -54.8 NC_006150.1 + 107691 0.69 0.881157
Target:  5'- cGGCcGCugGG-GGAGCGaCGGCCGGg -3'
miRNA:   3'- uCCGuCGugCCaUUUUGCgGCUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 998 0.69 0.881157
Target:  5'- uAGGCGGCGCaGcGAGcgccacACGCgGGCCGGg -3'
miRNA:   3'- -UCCGUCGUGcCaUUU------UGCGgCUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 28389 0.7 0.866889
Target:  5'- -uGCAGCuuGGUgGAGGCGCUGGCCu- -3'
miRNA:   3'- ucCGUCGugCCA-UUUUGCGGCUGGcu -5'
29263 5' -54.8 NC_006150.1 + 188711 0.7 0.859446
Target:  5'- aGGGCGGUACGGUAu-ACG-UGGCaCGAa -3'
miRNA:   3'- -UCCGUCGUGCCAUuuUGCgGCUG-GCU- -5'
29263 5' -54.8 NC_006150.1 + 45031 0.71 0.827754
Target:  5'- uGGCGaCACGGcauuauaacGAAACGCCGGCUGGu -3'
miRNA:   3'- uCCGUcGUGCCa--------UUUUGCGGCUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 215338 0.71 0.802158
Target:  5'- aAGGcCAGCugGGUGGAACauuCCaGACCGu -3'
miRNA:   3'- -UCC-GUCGugCCAUUUUGc--GG-CUGGCu -5'
29263 5' -54.8 NC_006150.1 + 135931 0.72 0.784337
Target:  5'- uGGCGGCcacagcugACGGUGAAgaGCGCCagcagagucugGACCGGc -3'
miRNA:   3'- uCCGUCG--------UGCCAUUU--UGCGG-----------CUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 85899 0.72 0.765987
Target:  5'- uGGCGGCGCuGUGu-ACGgCGGCCGGu -3'
miRNA:   3'- uCCGUCGUGcCAUuuUGCgGCUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 108207 0.72 0.737623
Target:  5'- cGGUcuuGUugGGcAAcACGCCGACCGAg -3'
miRNA:   3'- uCCGu--CGugCCaUUuUGCGGCUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 206902 0.72 0.734739
Target:  5'- gAGGCaucuccaaccucucGGCAuCGGagagagccaagcUGAAACGCCGGCCGGc -3'
miRNA:   3'- -UCCG--------------UCGU-GCC------------AUUUUGCGGCUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.