miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29263 5' -54.8 NC_006150.1 + 843 0.68 0.938718
Target:  5'- cGGCGGUguagACGGUGuggccgcGAGCGCUGagucaGCCGGg -3'
miRNA:   3'- uCCGUCG----UGCCAU-------UUUGCGGC-----UGGCU- -5'
29263 5' -54.8 NC_006150.1 + 998 0.69 0.881157
Target:  5'- uAGGCGGCGCaGcGAGcgccacACGCgGGCCGGg -3'
miRNA:   3'- -UCCGUCGUGcCaUUU------UGCGgCUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 1972 0.66 0.972162
Target:  5'- gAGGCGGUcuGCGGUGccgguGCGCauaucguagCGGCUGAu -3'
miRNA:   3'- -UCCGUCG--UGCCAUuu---UGCG---------GCUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 2247 0.67 0.961052
Target:  5'- cGGGCAcacGCGCGGUucAGcugcaggcgagggccGugGCCG-CCGAg -3'
miRNA:   3'- -UCCGU---CGUGCCA--UU---------------UugCGGCuGGCU- -5'
29263 5' -54.8 NC_006150.1 + 8331 0.69 0.900944
Target:  5'- aGGGCGGCACuGacu-GCGCUGGCCc- -3'
miRNA:   3'- -UCCGUCGUGcCauuuUGCGGCUGGcu -5'
29263 5' -54.8 NC_006150.1 + 13233 0.66 0.963088
Target:  5'- aAGGgAGCAgaUGGUAc-ACGCCaGACCGc -3'
miRNA:   3'- -UCCgUCGU--GCCAUuuUGCGG-CUGGCu -5'
29263 5' -54.8 NC_006150.1 + 28389 0.7 0.866889
Target:  5'- -uGCAGCuuGGUgGAGGCGCUGGCCu- -3'
miRNA:   3'- ucCGUCGugCCA-UUUUGCGGCUGGcu -5'
29263 5' -54.8 NC_006150.1 + 45031 0.71 0.827754
Target:  5'- uGGCGaCACGGcauuauaacGAAACGCCGGCUGGu -3'
miRNA:   3'- uCCGUcGUGCCa--------UUUUGCGGCUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 51849 0.67 0.959652
Target:  5'- uGGCAgGCAUGGUGAAA-GCCuGuCUGAg -3'
miRNA:   3'- uCCGU-CGUGCCAUUUUgCGG-CuGGCU- -5'
29263 5' -54.8 NC_006150.1 + 54876 0.67 0.959652
Target:  5'- gAGGCGGCAUGcGUu--AUGCuuaCGACUGAc -3'
miRNA:   3'- -UCCGUCGUGC-CAuuuUGCG---GCUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 75335 0.67 0.952134
Target:  5'- uGGaucuGGUGCGG-AAAACGUCGugCGAa -3'
miRNA:   3'- uCCg---UCGUGCCaUUUUGCGGCugGCU- -5'
29263 5' -54.8 NC_006150.1 + 75469 0.66 0.972162
Target:  5'- uGGCGGCAaugGGUAGAcagggcaucAUGCCGuucaccacGCCGGu -3'
miRNA:   3'- uCCGUCGUg--CCAUUU---------UGCGGC--------UGGCU- -5'
29263 5' -54.8 NC_006150.1 + 83279 0.74 0.648673
Target:  5'- uGGCcGCuaACGGUGcgauGACGCCGGCCGc -3'
miRNA:   3'- uCCGuCG--UGCCAUu---UUGCGGCUGGCu -5'
29263 5' -54.8 NC_006150.1 + 85899 0.72 0.765987
Target:  5'- uGGCGGCGCuGUGu-ACGgCGGCCGGu -3'
miRNA:   3'- uCCGUCGUGcCAUuuUGCgGCUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 87832 0.68 0.913019
Target:  5'- cGGUGGCGCaGUccgcGGCGCCGuCCGGg -3'
miRNA:   3'- uCCGUCGUGcCAuu--UUGCGGCuGGCU- -5'
29263 5' -54.8 NC_006150.1 + 88075 0.66 0.966315
Target:  5'- cGGCGcCGCGGacu-GCGCC-ACCGAg -3'
miRNA:   3'- uCCGUcGUGCCauuuUGCGGcUGGCU- -5'
29263 5' -54.8 NC_006150.1 + 88277 0.66 0.974793
Target:  5'- gGGGUAGCGCcagcGGAACGCCGcCCc- -3'
miRNA:   3'- -UCCGUCGUGcca-UUUUGCGGCuGGcu -5'
29263 5' -54.8 NC_006150.1 + 88290 0.69 0.894569
Target:  5'- uGGGCGGCACGG--AAGC-CUGGCUGc -3'
miRNA:   3'- -UCCGUCGUGCCauUUUGcGGCUGGCu -5'
29263 5' -54.8 NC_006150.1 + 88347 0.68 0.924178
Target:  5'- gGGGCGGCGCaugcAGGACGCCGuCCc- -3'
miRNA:   3'- -UCCGUCGUGcca-UUUUGCGGCuGGcu -5'
29263 5' -54.8 NC_006150.1 + 88691 0.66 0.963088
Target:  5'- aGGGCGGCcCGGac-GACGUgGAgCCGGa -3'
miRNA:   3'- -UCCGUCGuGCCauuUUGCGgCU-GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.