Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29264 | 3' | -61.1 | NC_006150.1 | + | 106529 | 0.68 | 0.653302 |
Target: 5'- aCGUcGUCCuccuccucucccccCGCGGCCGCGGCUGUu -3' miRNA: 3'- -GCAcCGGGuu------------GCGUCGGCGUCGACGc -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 112693 | 0.67 | 0.681352 |
Target: 5'- gGUGGCCCGACGUcgGGCCGagauCGGUUa-- -3' miRNA: 3'- gCACCGGGUUGCG--UCGGC----GUCGAcgc -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 129652 | 0.69 | 0.574799 |
Target: 5'- aCGUGGCCCGccucguCGCGGaCCuGCcuGCUGUGc -3' miRNA: 3'- -GCACCGGGUu-----GCGUC-GG-CGu-CGACGC- -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 132162 | 0.66 | 0.7656 |
Target: 5'- uCGUcGCCCAACa-GGCCGgcgugauaagaCAGCUGCGc -3' miRNA: 3'- -GCAcCGGGUUGcgUCGGC-----------GUCGACGC- -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 132439 | 0.68 | 0.6329 |
Target: 5'- gGUGGCCgAGgaguuugucucCGCGGUCGCGGCUcugGCc -3' miRNA: 3'- gCACCGGgUU-----------GCGUCGGCGUCGA---CGc -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 133354 | 0.7 | 0.555662 |
Target: 5'- -uUGGCcaCCGACGCGGCgucaGCAuGCUGCa -3' miRNA: 3'- gcACCG--GGUUGCGUCGg---CGU-CGACGc -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 133409 | 0.66 | 0.7656 |
Target: 5'- cCGUGGaaaCCgAGgGCGGCuCGCAGC-GCa -3' miRNA: 3'- -GCACCg--GG-UUgCGUCG-GCGUCGaCGc -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 143527 | 0.66 | 0.778071 |
Target: 5'- uCGUGGCCUGagguuuuuuauuuuuGCgGCGGCgCGCcAGCaGCGg -3' miRNA: 3'- -GCACCGGGU---------------UG-CGUCG-GCG-UCGaCGC- -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 154827 | 0.68 | 0.652332 |
Target: 5'- -cUGGCCCu-CGCGGCCGCcguGCUcaucGCu -3' miRNA: 3'- gcACCGGGuuGCGUCGGCGu--CGA----CGc -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 167333 | 0.71 | 0.454778 |
Target: 5'- -cUGGUCC-GCGCAGCCGCcGCgGUGa -3' miRNA: 3'- gcACCGGGuUGCGUCGGCGuCGaCGC- -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 171507 | 0.66 | 0.774531 |
Target: 5'- -uUGGCaau-CGCAGCCGUAGCgGUa -3' miRNA: 3'- gcACCGgguuGCGUCGGCGUCGaCGc -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 176378 | 0.7 | 0.527325 |
Target: 5'- aGUGccaaaGCCCAcacggcauGCGUAGCUGgGGCUGCa -3' miRNA: 3'- gCAC-----CGGGU--------UGCGUCGGCgUCGACGc -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 179820 | 0.66 | 0.747425 |
Target: 5'- --cGGCCaUGAUGCAGCCGguGUcucacaaacaUGCGc -3' miRNA: 3'- gcaCCGG-GUUGCGUCGGCguCG----------ACGC- -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 181257 | 0.66 | 0.747425 |
Target: 5'- uCGUGGUgCCGAgGCGGaCGCGGaggGCGg -3' miRNA: 3'- -GCACCG-GGUUgCGUCgGCGUCga-CGC- -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 215908 | 0.68 | 0.62318 |
Target: 5'- --gGGUCCGuACaaCGGCUGCAGCUGCa -3' miRNA: 3'- gcaCCGGGU-UGc-GUCGGCGUCGACGc -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 217910 | 0.69 | 0.603764 |
Target: 5'- aGUGGUgucgCUAGCGCGGCuCGC-GCUGUa -3' miRNA: 3'- gCACCG----GGUUGCGUCG-GCGuCGACGc -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 219995 | 0.68 | 0.662029 |
Target: 5'- --aGGUCCugcCGCcGCCGCuGCUGCu -3' miRNA: 3'- gcaCCGGGuu-GCGuCGGCGuCGACGc -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 220167 | 0.75 | 0.300622 |
Target: 5'- aGUGuGaCCGAUaGCuGCCGCAGCUGCGg -3' miRNA: 3'- gCAC-CgGGUUG-CGuCGGCGUCGACGC- -5' |
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29264 | 3' | -61.1 | NC_006150.1 | + | 220432 | 1.09 | 0.001319 |
Target: 5'- aCGUGGCCCAACGCAGCCGCAGCUGCGg -3' miRNA: 3'- -GCACCGGGUUGCGUCGGCGUCGACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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