miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29264 5' -53.5 NC_006150.1 + 207631 0.66 0.973285
Target:  5'- aUCuuCAUUGCGGC-GGCCcGGCCAg- -3'
miRNA:   3'- cAGu-GUGACGUCGaCCGGuUUGGUaa -5'
29264 5' -53.5 NC_006150.1 + 206472 0.66 0.970429
Target:  5'- uUCACAgaGCGGCUaaGGCU--GCCAUc -3'
miRNA:   3'- cAGUGUgaCGUCGA--CCGGuuUGGUAa -5'
29264 5' -53.5 NC_006150.1 + 192062 0.66 0.967359
Target:  5'- -gUACACgGCcauggccauccAGCUGGCCAucACCAUg -3'
miRNA:   3'- caGUGUGaCG-----------UCGACCGGUu-UGGUAa -5'
29264 5' -53.5 NC_006150.1 + 149815 0.66 0.964071
Target:  5'- aGUgGCGgUGCgagccuGGCUGGCCGcgAACCAc- -3'
miRNA:   3'- -CAgUGUgACG------UCGACCGGU--UUGGUaa -5'
29264 5' -53.5 NC_006150.1 + 120449 0.67 0.960558
Target:  5'- aUCACGgUGUAGCUgcgaaaacacgcGGCCAAaaaaauccGCCGUUa -3'
miRNA:   3'- cAGUGUgACGUCGA------------CCGGUU--------UGGUAA- -5'
29264 5' -53.5 NC_006150.1 + 39004 0.67 0.956815
Target:  5'- -gCGCACUG-AGCgGGCCAGcCCAa- -3'
miRNA:   3'- caGUGUGACgUCGaCCGGUUuGGUaa -5'
29264 5' -53.5 NC_006150.1 + 37542 0.67 0.956815
Target:  5'- -gUACGCUGUcauuGGCUGGaUCGAGCCGg- -3'
miRNA:   3'- caGUGUGACG----UCGACC-GGUUUGGUaa -5'
29264 5' -53.5 NC_006150.1 + 120823 0.67 0.954055
Target:  5'- cGUCACGCcggccguUGUAGCUGGgCCGcgagacgacgccgauGACCAg- -3'
miRNA:   3'- -CAGUGUG-------ACGUCGACC-GGU---------------UUGGUaa -5'
29264 5' -53.5 NC_006150.1 + 214045 0.67 0.952837
Target:  5'- ----gGCUGCGGCUGGCaAAACUAg- -3'
miRNA:   3'- cagugUGACGUCGACCGgUUUGGUaa -5'
29264 5' -53.5 NC_006150.1 + 207890 0.67 0.948619
Target:  5'- --gGCGuuCUGCAGUacUGGCCGGGCCGc- -3'
miRNA:   3'- cagUGU--GACGUCG--ACCGGUUUGGUaa -5'
29264 5' -53.5 NC_006150.1 + 272 0.68 0.928759
Target:  5'- cUUACuugGCAGCUGGCCAAauuuuacccccccGCCAc- -3'
miRNA:   3'- cAGUGugaCGUCGACCGGUU-------------UGGUaa -5'
29264 5' -53.5 NC_006150.1 + 28068 0.68 0.918136
Target:  5'- --aACACaagGCAGCUGGCCAAGguCCu-- -3'
miRNA:   3'- cagUGUGa--CGUCGACCGGUUU--GGuaa -5'
29264 5' -53.5 NC_006150.1 + 113646 0.68 0.918136
Target:  5'- aGUCGgACggagaUGCGGCUGGCgAGGCCc-- -3'
miRNA:   3'- -CAGUgUG-----ACGUCGACCGgUUUGGuaa -5'
29264 5' -53.5 NC_006150.1 + 220184 0.68 0.912183
Target:  5'- -cCGCAgCUGCGGCUGcGUUggGCCAc- -3'
miRNA:   3'- caGUGU-GACGUCGAC-CGGuuUGGUaa -5'
29264 5' -53.5 NC_006150.1 + 167578 0.69 0.905984
Target:  5'- aUCAcCGCgGCGGCUGGC-GGACCAg- -3'
miRNA:   3'- cAGU-GUGaCGUCGACCGgUUUGGUaa -5'
29264 5' -53.5 NC_006150.1 + 220396 1.05 0.009988
Target:  5'- gGUCACACUGCAGCUGGCCAAACCAUUu -3'
miRNA:   3'- -CAGUGUGACGUCGACCGGUUUGGUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.