miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29266 3' -54.7 NC_006150.1 + 69367 0.68 0.930263
Target:  5'- cGUGAGCCGCaGCAaccgUGGgauguugacGGAGCGCACc -3'
miRNA:   3'- -CGCUCGGCG-CGU----GCCa--------CUUUGUGUGu -5'
29266 3' -54.7 NC_006150.1 + 71048 0.68 0.921846
Target:  5'- -gGAGCCGCGUAUcagugcggcgcaaggGGUGcgcucgcuGGCGCACAu -3'
miRNA:   3'- cgCUCGGCGCGUG---------------CCACu-------UUGUGUGU- -5'
29266 3' -54.7 NC_006150.1 + 55370 0.69 0.908118
Target:  5'- uGCGGugaccaagcuGCCGUGCACGGUGcgaaucguCACugAg -3'
miRNA:   3'- -CGCU----------CGGCGCGUGCCACuuu-----GUGugU- -5'
29266 3' -54.7 NC_006150.1 + 86412 0.69 0.895677
Target:  5'- gGCGcGCCagGCGCACGGU---GCACAUu -3'
miRNA:   3'- -CGCuCGG--CGCGUGCCAcuuUGUGUGu -5'
29266 3' -54.7 NC_006150.1 + 139465 0.7 0.882349
Target:  5'- -aGAGCCGgGUGCGG-GAAuuGCGCGa -3'
miRNA:   3'- cgCUCGGCgCGUGCCaCUUugUGUGU- -5'
29266 3' -54.7 NC_006150.1 + 168786 0.7 0.875361
Target:  5'- uGCGAGCCGUGCcCGGcUGGguccuacaacGACaaGCGCGa -3'
miRNA:   3'- -CGCUCGGCGCGuGCC-ACU----------UUG--UGUGU- -5'
29266 3' -54.7 NC_006150.1 + 88413 0.7 0.868164
Target:  5'- cGCGgacGGCCGCGCugGGUcu-GC-CGCGg -3'
miRNA:   3'- -CGC---UCGGCGCGugCCAcuuUGuGUGU- -5'
29266 3' -54.7 NC_006150.1 + 182009 0.7 0.853161
Target:  5'- gGUGAGCUGCGCA-GGUaauccuGACGCACc -3'
miRNA:   3'- -CGCUCGGCGCGUgCCAcu----UUGUGUGu -5'
29266 3' -54.7 NC_006150.1 + 167339 0.71 0.81239
Target:  5'- cGCGcAGCCGC-CGCGGUGAugUugAUg -3'
miRNA:   3'- -CGC-UCGGCGcGUGCCACUuuGugUGu -5'
29266 3' -54.7 NC_006150.1 + 75662 0.73 0.739396
Target:  5'- -aGAGuuGCGCACGGUGuucUugACAa -3'
miRNA:   3'- cgCUCggCGCGUGCCACuuuGugUGU- -5'
29266 3' -54.7 NC_006150.1 + 128749 0.75 0.590366
Target:  5'- gGUGuuccGCCGCGguCGGUGGGAUugACAa -3'
miRNA:   3'- -CGCu---CGGCGCguGCCACUUUGugUGU- -5'
29266 3' -54.7 NC_006150.1 + 123773 0.78 0.455966
Target:  5'- aCGAGCUGCGCauaGCGGUGGAAgGCAa- -3'
miRNA:   3'- cGCUCGGCGCG---UGCCACUUUgUGUgu -5'
29266 3' -54.7 NC_006150.1 + 119803 0.78 0.429261
Target:  5'- uGCgGGGCCGCaGCGCGGUaGAGCGCGCc -3'
miRNA:   3'- -CG-CUCGGCG-CGUGCCAcUUUGUGUGu -5'
29266 3' -54.7 NC_006150.1 + 170261 0.79 0.386879
Target:  5'- cGCGAGCCGC-UAUgugGGUGAGACGCGCu -3'
miRNA:   3'- -CGCUCGGCGcGUG---CCACUUUGUGUGu -5'
29266 3' -54.7 NC_006150.1 + 377 1.11 0.004559
Target:  5'- cGCGAGCCGCGCACGGUGAAACACACAc -3'
miRNA:   3'- -CGCUCGGCGCGUGCCACUUUGUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.