miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29266 5' -65.5 NC_006150.1 + 149082 0.66 0.624763
Target:  5'- uGCCGCCacaaCCGUCCCUgUGUgugaGGCUCc -3'
miRNA:   3'- -UGGUGGc---GGCAGGGGgACAg---CCGGGc -5'
29266 5' -65.5 NC_006150.1 + 125636 0.66 0.615452
Target:  5'- gGCgCGCCGCCaUCUCCCUacggGGUCCGg -3'
miRNA:   3'- -UG-GUGGCGGcAGGGGGAcag-CCGGGC- -5'
29266 5' -65.5 NC_006150.1 + 13487 0.66 0.606152
Target:  5'- -aCACCGCCG-CCUCCacUUGGCaCCGu -3'
miRNA:   3'- ugGUGGCGGCaGGGGGacAGCCG-GGC- -5'
29266 5' -65.5 NC_006150.1 + 107383 0.66 0.587604
Target:  5'- -aCAUCGUCGUCgCCaCC-GUCGGCUCa -3'
miRNA:   3'- ugGUGGCGGCAG-GG-GGaCAGCCGGGc -5'
29266 5' -65.5 NC_006150.1 + 107935 0.66 0.578368
Target:  5'- cCgGCCGUCGcUCCCCCaG-CGGCCg- -3'
miRNA:   3'- uGgUGGCGGC-AGGGGGaCaGCCGGgc -5'
29266 5' -65.5 NC_006150.1 + 88260 0.67 0.559996
Target:  5'- -aCGCCGCCccaUCCCCCaGgCGGCCa- -3'
miRNA:   3'- ugGUGGCGGc--AGGGGGaCaGCCGGgc -5'
29266 5' -65.5 NC_006150.1 + 168922 0.67 0.55087
Target:  5'- --gGCCGCUGUCCUggCaaGUCGGUCCGc -3'
miRNA:   3'- uggUGGCGGCAGGG--GgaCAGCCGGGC- -5'
29266 5' -65.5 NC_006150.1 + 88360 0.67 0.523785
Target:  5'- cCCACCugcgagcuguGCgGUCCCCggGUUGGCCgGg -3'
miRNA:   3'- uGGUGG----------CGgCAGGGGgaCAGCCGGgC- -5'
29266 5' -65.5 NC_006150.1 + 88184 0.68 0.506014
Target:  5'- gGCCGCgCGCCcccgCCCuUCUGggCGGCCCu -3'
miRNA:   3'- -UGGUG-GCGGca--GGG-GGACa-GCCGGGc -5'
29266 5' -65.5 NC_006150.1 + 81192 0.68 0.506014
Target:  5'- uGCCGCCGCCGcCCCaUCUGgcaCGggacGCCUGa -3'
miRNA:   3'- -UGGUGGCGGCaGGG-GGACa--GC----CGGGC- -5'
29266 5' -65.5 NC_006150.1 + 169622 0.68 0.462793
Target:  5'- aGCCGCCuugcccuCCGUCCgagCCCgaucgaUGUUGGCCCGu -3'
miRNA:   3'- -UGGUGGc------GGCAGG---GGG------ACAGCCGGGC- -5'
29266 5' -65.5 NC_006150.1 + 34308 0.69 0.43781
Target:  5'- cCCACCGCC-UCCCUCaacaGGCCCu -3'
miRNA:   3'- uGGUGGCGGcAGGGGGacagCCGGGc -5'
29266 5' -65.5 NC_006150.1 + 95430 0.69 0.429655
Target:  5'- cUCACCaGCCcaUCCCgCUGUCGGCUCu -3'
miRNA:   3'- uGGUGG-CGGc-AGGGgGACAGCCGGGc -5'
29266 5' -65.5 NC_006150.1 + 218250 0.69 0.422392
Target:  5'- gGCCGuuGCUGUCUCCUgagucacagcccgccGUCGGCgCCGa -3'
miRNA:   3'- -UGGUggCGGCAGGGGGa--------------CAGCCG-GGC- -5'
29266 5' -65.5 NC_006150.1 + 42193 0.71 0.325581
Target:  5'- uGCUACUcCCGUCCCUCcugUGUCGGaCCCa -3'
miRNA:   3'- -UGGUGGcGGCAGGGGG---ACAGCC-GGGc -5'
29266 5' -65.5 NC_006150.1 + 563 0.72 0.287075
Target:  5'- gACCGCCaaccccgggcaGCCGUCCUCCg--CGGCCuCGg -3'
miRNA:   3'- -UGGUGG-----------CGGCAGGGGGacaGCCGG-GC- -5'
29266 5' -65.5 NC_006150.1 + 412 1.07 0.001078
Target:  5'- cACCACCGCCGUCCCCCUGUCGGCCCGu -3'
miRNA:   3'- -UGGUGGCGGCAGGGGGACAGCCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.