miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29269 5' -62.6 NC_006150.1 + 88113 0.66 0.712333
Target:  5'- cACGgCUAUGCCCagGuCGCcacuGGCGauUGCCCg -3'
miRNA:   3'- -UGCgGGUGCGGGa-C-GCG----UCGU--ACGGG- -5'
29269 5' -62.6 NC_006150.1 + 218105 0.66 0.707629
Target:  5'- cGCGCUCugGUCCUcgucggucaacagcuCcuggcggcaaaccagGCAGCAUGCCCu -3'
miRNA:   3'- -UGCGGGugCGGGAc--------------G---------------CGUCGUACGGG- -5'
29269 5' -62.6 NC_006150.1 + 92662 0.66 0.702911
Target:  5'- -aGCCgGgGCCCUGUGaC-GUGUGCCUu -3'
miRNA:   3'- ugCGGgUgCGGGACGC-GuCGUACGGG- -5'
29269 5' -62.6 NC_006150.1 + 88247 0.66 0.702911
Target:  5'- aGCGgCCGCgcaGCCCUggcgggggGCGgAGCGUGCgCu -3'
miRNA:   3'- -UGCgGGUG---CGGGA--------CGCgUCGUACGgG- -5'
29269 5' -62.6 NC_006150.1 + 119546 0.66 0.693435
Target:  5'- gGCGUCUuuggcGCGCUCUaccGCGCuGCG-GCCCc -3'
miRNA:   3'- -UGCGGG-----UGCGGGA---CGCGuCGUaCGGG- -5'
29269 5' -62.6 NC_006150.1 + 71891 0.66 0.690584
Target:  5'- cCGCCCGCGCCgaGCGaaacgacGCcauagauagaguguGUGUCCg -3'
miRNA:   3'- uGCGGGUGCGGgaCGCgu-----CG--------------UACGGG- -5'
29269 5' -62.6 NC_006150.1 + 617 0.66 0.683915
Target:  5'- cCGCCgGCGCCCgGCGCAcGC-UGaaauaaaaaCCg -3'
miRNA:   3'- uGCGGgUGCGGGaCGCGU-CGuACg--------GG- -5'
29269 5' -62.6 NC_006150.1 + 133009 0.66 0.683915
Target:  5'- -aGCCUgcacauauCGCCCUGCGCcAGUGUGUa- -3'
miRNA:   3'- ugCGGGu-------GCGGGACGCG-UCGUACGgg -5'
29269 5' -62.6 NC_006150.1 + 32957 0.66 0.68296
Target:  5'- cCGCCCgGCuCCCUcGUGCgAGCGacgcuguUGCCCa -3'
miRNA:   3'- uGCGGG-UGcGGGA-CGCG-UCGU-------ACGGG- -5'
29269 5' -62.6 NC_006150.1 + 116103 0.66 0.674356
Target:  5'- cACGCCCAUGUCgCUGCGCgaacGGUugagauacGCCa -3'
miRNA:   3'- -UGCGGGUGCGG-GACGCG----UCGua------CGGg -5'
29269 5' -62.6 NC_006150.1 + 69495 0.66 0.674356
Target:  5'- -gGCCCAacacCGCCUUccagccgacccGCagGCAGCgAUGCCCa -3'
miRNA:   3'- ugCGGGU----GCGGGA-----------CG--CGUCG-UACGGG- -5'
29269 5' -62.6 NC_006150.1 + 116005 0.66 0.664767
Target:  5'- uGCGgccuaUCCACGCCggCUGCGUGGCGgaCCCa -3'
miRNA:   3'- -UGC-----GGGUGCGG--GACGCGUCGUacGGG- -5'
29269 5' -62.6 NC_006150.1 + 106625 0.66 0.664767
Target:  5'- aGCG-UCGCGCCCUcucaaGCGUccuuGGCAcugGCCCa -3'
miRNA:   3'- -UGCgGGUGCGGGA-----CGCG----UCGUa--CGGG- -5'
29269 5' -62.6 NC_006150.1 + 85032 0.66 0.663807
Target:  5'- uGCGCCucaucacCugGCCCUcaucUGCGGUacGUGCCCc -3'
miRNA:   3'- -UGCGG-------GugCGGGAc---GCGUCG--UACGGG- -5'
29269 5' -62.6 NC_006150.1 + 141108 0.67 0.655154
Target:  5'- aACGCcgucugcaauaCCACGCUCUaccGCgaGCGGCGugUGCCCu -3'
miRNA:   3'- -UGCG-----------GGUGCGGGA---CG--CGUCGU--ACGGG- -5'
29269 5' -62.6 NC_006150.1 + 81177 0.67 0.655154
Target:  5'- cGCGCCCACcCCCUcUGCcGCcgccGCCCc -3'
miRNA:   3'- -UGCGGGUGcGGGAcGCGuCGua--CGGG- -5'
29269 5' -62.6 NC_006150.1 + 181536 0.67 0.655154
Target:  5'- uACGCCgC-CGCCCaGgGCAGCc-GCCUc -3'
miRNA:   3'- -UGCGG-GuGCGGGaCgCGUCGuaCGGG- -5'
29269 5' -62.6 NC_006150.1 + 119031 0.67 0.635887
Target:  5'- gGCGCCgCugGCCaC-GCGCGGCA--CCUg -3'
miRNA:   3'- -UGCGG-GugCGG-GaCGCGUCGUacGGG- -5'
29269 5' -62.6 NC_006150.1 + 216377 0.67 0.626246
Target:  5'- -aGCCCugGuCCCUGCcgagcaccGCAGCc-GCCa -3'
miRNA:   3'- ugCGGGugC-GGGACG--------CGUCGuaCGGg -5'
29269 5' -62.6 NC_006150.1 + 118761 0.67 0.625282
Target:  5'- uCGCaCCacgaaguaaggagGCGCUUUGCGCAGCA-GCaCCu -3'
miRNA:   3'- uGCG-GG-------------UGCGGGACGCGUCGUaCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.