Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29274 | 3' | -58.5 | NC_006150.1 | + | 8738 | 1.04 | 0.004683 |
Target: 5'- gAUCCCAAACCCCACGUCUCCGCCGAAg -3' miRNA: 3'- -UAGGGUUUGGGGUGCAGAGGCGGCUU- -5' |
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29274 | 3' | -58.5 | NC_006150.1 | + | 204655 | 0.66 | 0.868246 |
Target: 5'- cUCCCAAGCCCCcuggcgagggucaaaACG-CUCCGUUa-- -3' miRNA: 3'- uAGGGUUUGGGG---------------UGCaGAGGCGGcuu -5' |
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29274 | 3' | -58.5 | NC_006150.1 | + | 182763 | 0.66 | 0.850351 |
Target: 5'- cUCCCucGCCUCACGuUCUgaGCUGAAc -3' miRNA: 3'- uAGGGuuUGGGGUGC-AGAggCGGCUU- -5' |
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29274 | 3' | -58.5 | NC_006150.1 | + | 86224 | 0.66 | 0.842573 |
Target: 5'- -aCCCAaacaGACUCCGCGccaccCUCCGCCa-- -3' miRNA: 3'- uaGGGU----UUGGGGUGCa----GAGGCGGcuu -5' |
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29274 | 3' | -58.5 | NC_006150.1 | + | 66135 | 0.67 | 0.809719 |
Target: 5'- gAUCCUAAACCCCGUGg--CCGCCu-- -3' miRNA: 3'- -UAGGGUUUGGGGUGCagaGGCGGcuu -5' |
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29274 | 3' | -58.5 | NC_006150.1 | + | 65178 | 0.67 | 0.801107 |
Target: 5'- -cCCCcAGCgCCACGg--CCGCCGAGc -3' miRNA: 3'- uaGGGuUUGgGGUGCagaGGCGGCUU- -5' |
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29274 | 3' | -58.5 | NC_006150.1 | + | 215515 | 0.71 | 0.587723 |
Target: 5'- uUCCCGucucugcaauuCCCCACGUCaUCCGCCc-- -3' miRNA: 3'- uAGGGUuu---------GGGGUGCAG-AGGCGGcuu -5' |
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29274 | 3' | -58.5 | NC_006150.1 | + | 29529 | 0.73 | 0.484005 |
Target: 5'- aAUCCCAGACCCCGauucgUGUUUCguuUGCCGAAc -3' miRNA: 3'- -UAGGGUUUGGGGU-----GCAGAG---GCGGCUU- -5' |
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29274 | 3' | -58.5 | NC_006150.1 | + | 93165 | 0.67 | 0.792351 |
Target: 5'- -cCCCAuAGCCCCcacuGCGUUUCCGUCa-- -3' miRNA: 3'- uaGGGU-UUGGGG----UGCAGAGGCGGcuu -5' |
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29274 | 3' | -58.5 | NC_006150.1 | + | 62970 | 0.67 | 0.818179 |
Target: 5'- gGUCCCGGGuCUCCGCgGUC-CCGuuGAAc -3' miRNA: 3'- -UAGGGUUU-GGGGUG-CAGaGGCggCUU- -5' |
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29274 | 3' | -58.5 | NC_006150.1 | + | 149504 | 0.66 | 0.849582 |
Target: 5'- -aCCCGAgguggaaGCCCCuCGUCgcCCGCCGc- -3' miRNA: 3'- uaGGGUU-------UGGGGuGCAGa-GGCGGCuu -5' |
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29274 | 3' | -58.5 | NC_006150.1 | + | 152931 | 0.66 | 0.872543 |
Target: 5'- -aCCUaauGAACCaCCGCGUC-CUGCUGGAg -3' miRNA: 3'- uaGGG---UUUGG-GGUGCAGaGGCGGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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