Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29274 | 5' | -54.3 | NC_006150.1 | + | 8773 | 1.06 | 0.007798 |
Target: 5'- gUUUCCAGUAACCCGGGGAGCAGAUGAc -3' miRNA: 3'- -AAAGGUCAUUGGGCCCCUCGUCUACU- -5' |
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29274 | 5' | -54.3 | NC_006150.1 | + | 55271 | 0.66 | 0.97489 |
Target: 5'- aUUUgA-UAGCCgGGGGAGCAGAa-- -3' miRNA: 3'- aAAGgUcAUUGGgCCCCUCGUCUacu -5' |
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29274 | 5' | -54.3 | NC_006150.1 | + | 194752 | 0.66 | 0.97489 |
Target: 5'- --aCCAGaGACCCGGagugaGGAGCAGu--- -3' miRNA: 3'- aaaGGUCaUUGGGCC-----CCUCGUCuacu -5' |
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29274 | 5' | -54.3 | NC_006150.1 | + | 220885 | 0.66 | 0.969343 |
Target: 5'- --gCCAGUGAgUUGGaGGAGCAGGc-- -3' miRNA: 3'- aaaGGUCAUUgGGCC-CCUCGUCUacu -5' |
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29274 | 5' | -54.3 | NC_006150.1 | + | 124777 | 0.66 | 0.969343 |
Target: 5'- --aCCuGUgcGACCUcGGGAGCGGGUGu -3' miRNA: 3'- aaaGGuCA--UUGGGcCCCUCGUCUACu -5' |
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29274 | 5' | -54.3 | NC_006150.1 | + | 144538 | 0.66 | 0.969343 |
Target: 5'- ----gAGUAGCCCuauaggaauuGGGGAGCAGGg-- -3' miRNA: 3'- aaaggUCAUUGGG----------CCCCUCGUCUacu -5' |
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29274 | 5' | -54.3 | NC_006150.1 | + | 34995 | 0.7 | 0.839838 |
Target: 5'- -cUCCAGUAAcuaaaguCCCGGGGGGUgAGAa-- -3' miRNA: 3'- aaAGGUCAUU-------GGGCCCCUCG-UCUacu -5' |
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29274 | 5' | -54.3 | NC_006150.1 | + | 438 | 0.7 | 0.837379 |
Target: 5'- gUUCCGGgaggcuggaggggGGCCCGGGGGucGCGGcgGGg -3' miRNA: 3'- aAAGGUCa------------UUGGGCCCCU--CGUCuaCU- -5' |
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29274 | 5' | -54.3 | NC_006150.1 | + | 88617 | 0.73 | 0.691595 |
Target: 5'- --cCCGGccAACCCGGGGAccgcacagcucGCAGGUGGg -3' miRNA: 3'- aaaGGUCa-UUGGGCCCCU-----------CGUCUACU- -5' |
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29274 | 5' | -54.3 | NC_006150.1 | + | 215791 | 0.69 | 0.892683 |
Target: 5'- --gUCGGUGAUCUGGGacacauuguGGGCGGAUGAc -3' miRNA: 3'- aaaGGUCAUUGGGCCC---------CUCGUCUACU- -5' |
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29274 | 5' | -54.3 | NC_006150.1 | + | 88320 | 0.68 | 0.928486 |
Target: 5'- -aUCCccccGACCaGGGGAGCAGggGAg -3' miRNA: 3'- aaAGGuca-UUGGgCCCCUCGUCuaCU- -5' |
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29274 | 5' | -54.3 | NC_006150.1 | + | 1759 | 0.67 | 0.951778 |
Target: 5'- ----gGGUGA--CGGGGGGCAGGUGAg -3' miRNA: 3'- aaaggUCAUUggGCCCCUCGUCUACU- -5' |
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29274 | 5' | -54.3 | NC_006150.1 | + | 192172 | 0.66 | 0.969343 |
Target: 5'- --cUCAGaAGCUCGGGGAGCA--UGGg -3' miRNA: 3'- aaaGGUCaUUGGGCCCCUCGUcuACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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