miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29277 3' -56.5 NC_006150.1 + 129350 0.66 0.939953
Target:  5'- aCAA-GGUGGUGGUagAGGCACGGAc-- -3'
miRNA:   3'- -GUUcCCGCUACCGg-UCCGUGUCUacg -5'
29277 3' -56.5 NC_006150.1 + 169844 0.66 0.939953
Target:  5'- cCAAGaGUGA-GGCagaaAGGCACAGG-GCa -3'
miRNA:   3'- -GUUCcCGCUaCCGg---UCCGUGUCUaCG- -5'
29277 3' -56.5 NC_006150.1 + 92373 0.66 0.939953
Target:  5'- --cGGGCGGUGGggauUCGGGCGagucgcgcacCGGcgGCg -3'
miRNA:   3'- guuCCCGCUACC----GGUCCGU----------GUCuaCG- -5'
29277 3' -56.5 NC_006150.1 + 2608 0.66 0.92454
Target:  5'- aCAAGGGCGgcGGCUcuggaaaGGGuCGUAGAaGCg -3'
miRNA:   3'- -GUUCCCGCuaCCGG-------UCC-GUGUCUaCG- -5'
29277 3' -56.5 NC_006150.1 + 80540 0.66 0.913998
Target:  5'- ---aGGCaucUGGCCAGGC-CGGAUGa -3'
miRNA:   3'- guucCCGcu-ACCGGUCCGuGUCUACg -5'
29277 3' -56.5 NC_006150.1 + 92472 0.67 0.907517
Target:  5'- uCGGGGGCGugugcucgcuuucGUGGuCCAGGCAgaAGcgccGUGCc -3'
miRNA:   3'- -GUUCCCGC-------------UACC-GGUCCGUg-UC----UACG- -5'
29277 3' -56.5 NC_006150.1 + 183874 0.67 0.895677
Target:  5'- -uGGGaGCGGUGGUugcagcggcgCAGGCaACGGGcUGCg -3'
miRNA:   3'- guUCC-CGCUACCG----------GUCCG-UGUCU-ACG- -5'
29277 3' -56.5 NC_006150.1 + 172658 0.67 0.889122
Target:  5'- aAAGGGCugGAU-GCCagaGGGC-CAGGUGCc -3'
miRNA:   3'- gUUCCCG--CUAcCGG---UCCGuGUCUACG- -5'
29277 3' -56.5 NC_006150.1 + 193679 0.67 0.882349
Target:  5'- --uGGGCGAUGGaCCgugaaGGGUugcaaGCgAGGUGCg -3'
miRNA:   3'- guuCCCGCUACC-GG-----UCCG-----UG-UCUACG- -5'
29277 3' -56.5 NC_006150.1 + 132628 0.67 0.875361
Target:  5'- aCAAGcgguaGGCGuacGCCAGGCGCAGgAUGg -3'
miRNA:   3'- -GUUC-----CCGCuacCGGUCCGUGUC-UACg -5'
29277 3' -56.5 NC_006150.1 + 137817 0.67 0.875361
Target:  5'- -cAGGGCGcugaGUGGagAGGCGCGGcagGCg -3'
miRNA:   3'- guUCCCGC----UACCggUCCGUGUCua-CG- -5'
29277 3' -56.5 NC_006150.1 + 145109 0.68 0.845366
Target:  5'- uGAGGGgaGGUGG-CAGGCugAGuuuuuUGCa -3'
miRNA:   3'- gUUCCCg-CUACCgGUCCGugUCu----ACG- -5'
29277 3' -56.5 NC_006150.1 + 172322 0.68 0.845366
Target:  5'- gAAGGGUGAaGagaucagacGCCAGGCAgaGGGUGUg -3'
miRNA:   3'- gUUCCCGCUaC---------CGGUCCGUg-UCUACG- -5'
29277 3' -56.5 NC_006150.1 + 130661 0.68 0.837385
Target:  5'- gAGGGGCGcaGGCUgccacGGGCgACAGAuucUGCa -3'
miRNA:   3'- gUUCCCGCuaCCGG-----UCCG-UGUCU---ACG- -5'
29277 3' -56.5 NC_006150.1 + 88267 0.68 0.837385
Target:  5'- gGGGGGCGGagcgUGcGCUcGGCugGGcgGCa -3'
miRNA:   3'- gUUCCCGCU----AC-CGGuCCGugUCuaCG- -5'
29277 3' -56.5 NC_006150.1 + 128526 0.69 0.803732
Target:  5'- aGAGGGCGGccacauUGGUgaacgAGGUAgAGAUGCa -3'
miRNA:   3'- gUUCCCGCU------ACCGg----UCCGUgUCUACG- -5'
29277 3' -56.5 NC_006150.1 + 202899 0.69 0.803732
Target:  5'- --cGGGCGGuugUGGCgCGGGCACuucuuguuGUGCa -3'
miRNA:   3'- guuCCCGCU---ACCG-GUCCGUGuc------UACG- -5'
29277 3' -56.5 NC_006150.1 + 88425 0.69 0.794924
Target:  5'- gAAGGGCGggGGCgCGcGGCcCAGGaGCc -3'
miRNA:   3'- gUUCCCGCuaCCG-GU-CCGuGUCUaCG- -5'
29277 3' -56.5 NC_006150.1 + 70928 0.69 0.785974
Target:  5'- --uGGGCGGUGGaaaGGGCgGCGGA-GCg -3'
miRNA:   3'- guuCCCGCUACCgg-UCCG-UGUCUaCG- -5'
29277 3' -56.5 NC_006150.1 + 149965 0.7 0.775976
Target:  5'- gCGAGGGCGGcgcgaccUGcCCGGGCA-GGGUGCc -3'
miRNA:   3'- -GUUCCCGCU-------ACcGGUCCGUgUCUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.