miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29278 5' -54.1 NC_006150.1 + 27040 0.67 0.957581
Target:  5'- cAGCAgggaGUGCCugGAGCCacuuaCGCGGGGGc -3'
miRNA:   3'- uUUGUaa--CACGG--CUCGGg----GUGUCUCC- -5'
29278 5' -54.1 NC_006150.1 + 86491 0.67 0.957581
Target:  5'- uAACAguucGCCG-GCCUgGCGGAGGg -3'
miRNA:   3'- uUUGUaacaCGGCuCGGGgUGUCUCC- -5'
29278 5' -54.1 NC_006150.1 + 147597 0.67 0.949679
Target:  5'- -cGCGgcuuuUGCCGuGCCCCucCAGGGGu -3'
miRNA:   3'- uuUGUaac--ACGGCuCGGGGu-GUCUCC- -5'
29278 5' -54.1 NC_006150.1 + 31963 0.68 0.940853
Target:  5'- cGACAcUGUGcCCGAGUgUCcCAGAGGc -3'
miRNA:   3'- uUUGUaACAC-GGCUCGgGGuGUCUCC- -5'
29278 5' -54.1 NC_006150.1 + 181257 0.68 0.920364
Target:  5'- --uCGUgGUGCCGAGgCggaCGCGGAGGg -3'
miRNA:   3'- uuuGUAaCACGGCUCgGg--GUGUCUCC- -5'
29278 5' -54.1 NC_006150.1 + 113812 0.69 0.895424
Target:  5'- -cGCAUUGUGCUGAGugacuuuCCgCCGCAGcGGc -3'
miRNA:   3'- uuUGUAACACGGCUC-------GG-GGUGUCuCC- -5'
29278 5' -54.1 NC_006150.1 + 297 0.7 0.875449
Target:  5'- --cCGUcGUGCCGAGgC-CGCGGAGGa -3'
miRNA:   3'- uuuGUAaCACGGCUCgGgGUGUCUCC- -5'
29278 5' -54.1 NC_006150.1 + 757 0.7 0.875449
Target:  5'- cAAACAgcgccagGcUGCCGGcguccuGCCCCGCAGAGa -3'
miRNA:   3'- -UUUGUaa-----C-ACGGCU------CGGGGUGUCUCc -5'
29278 5' -54.1 NC_006150.1 + 133631 0.72 0.775171
Target:  5'- -cGCGUcGUccGCCacaGGCCCCGCAGGGGa -3'
miRNA:   3'- uuUGUAaCA--CGGc--UCGGGGUGUCUCC- -5'
29278 5' -54.1 NC_006150.1 + 149322 0.78 0.477138
Target:  5'- cGAgAUUuUGCCGGGCCCCAgcCGGAGGa -3'
miRNA:   3'- uUUgUAAcACGGCUCGGGGU--GUCUCC- -5'
29278 5' -54.1 NC_006150.1 + 31593 1.09 0.005586
Target:  5'- aAAACAUUGUGCCGAGCCCCACAGAGGg -3'
miRNA:   3'- -UUUGUAACACGGCUCGGGGUGUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.