miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29279 3' -55.5 NC_006150.1 + 88263 0.66 0.967193
Target:  5'- uGGCGGGgggcgGAGCGUGcgcucggcUG-GGCGGcacGGAa -3'
miRNA:   3'- -CCGCCUa----CUCGCAU--------ACaCCGCU---CCUg -5'
29279 3' -55.5 NC_006150.1 + 1225 0.66 0.967193
Target:  5'- gGGCGag-GAGUGUGuUGUGGaGAGGGu -3'
miRNA:   3'- -CCGCcuaCUCGCAU-ACACCgCUCCUg -5'
29279 3' -55.5 NC_006150.1 + 202488 0.66 0.967193
Target:  5'- aGCGaGAUGAGCGUcc----CGAGGACg -3'
miRNA:   3'- cCGC-CUACUCGCAuacaccGCUCCUG- -5'
29279 3' -55.5 NC_006150.1 + 147087 0.66 0.964043
Target:  5'- --aGGGUGGuCGUGUgGUGGUGGGGGg -3'
miRNA:   3'- ccgCCUACUcGCAUA-CACCGCUCCUg -5'
29279 3' -55.5 NC_006150.1 + 1103 0.66 0.960688
Target:  5'- uGUGGAuUGAGUGgcgGcaUGGCGAGGGu -3'
miRNA:   3'- cCGCCU-ACUCGCauaC--ACCGCUCCUg -5'
29279 3' -55.5 NC_006150.1 + 95199 0.66 0.957122
Target:  5'- gGGCuGGUGAGUGUGcagguaGUGcGCGAGGu- -3'
miRNA:   3'- -CCGcCUACUCGCAUa-----CAC-CGCUCCug -5'
29279 3' -55.5 NC_006150.1 + 107645 0.66 0.957122
Target:  5'- aGCGGAcuugcuacugUGAGCcgacgGUGGCGAcGACg -3'
miRNA:   3'- cCGCCU----------ACUCGcaua-CACCGCUcCUG- -5'
29279 3' -55.5 NC_006150.1 + 60104 0.66 0.95488
Target:  5'- aGGUGGGUGAGCGUAguuUGGUuGuuuagguauucgcacGGACu -3'
miRNA:   3'- -CCGCCUACUCGCAUac-ACCGcU---------------CCUG- -5'
29279 3' -55.5 NC_006150.1 + 221005 0.67 0.945123
Target:  5'- aGUGGAgugGAG---GUGUGGUGAGGAa -3'
miRNA:   3'- cCGCCUa--CUCgcaUACACCGCUCCUg -5'
29279 3' -55.5 NC_006150.1 + 182853 0.67 0.940679
Target:  5'- gGGUGGG-GGGUGUuuUG-GGCGGGGGg -3'
miRNA:   3'- -CCGCCUaCUCGCAu-ACaCCGCUCCUg -5'
29279 3' -55.5 NC_006150.1 + 136764 0.67 0.940679
Target:  5'- --aGGAUGAGUGgcgcGUGUucGGCggaGAGGACa -3'
miRNA:   3'- ccgCCUACUCGCa---UACA--CCG---CUCCUG- -5'
29279 3' -55.5 NC_006150.1 + 184095 0.67 0.940222
Target:  5'- gGGCGcAUGAcGUGUgGUGUcagugcggggacuGGCGGGGGCa -3'
miRNA:   3'- -CCGCcUACU-CGCA-UACA-------------CCGCUCCUG- -5'
29279 3' -55.5 NC_006150.1 + 132414 0.67 0.931111
Target:  5'- aGGCGGcucggaccuAUGGGCuGgcgGUGGCcGAGGAg -3'
miRNA:   3'- -CCGCC---------UACUCG-CauaCACCG-CUCCUg -5'
29279 3' -55.5 NC_006150.1 + 136217 0.68 0.909239
Target:  5'- gGGCGag-GAGCGUGUGa-GUGAGGAa -3'
miRNA:   3'- -CCGCcuaCUCGCAUACacCGCUCCUg -5'
29279 3' -55.5 NC_006150.1 + 220951 0.69 0.876865
Target:  5'- aGCGGAgaugcugccagGAGUGUGgcgaGcGGUGAGGACg -3'
miRNA:   3'- cCGCCUa----------CUCGCAUa---CaCCGCUCCUG- -5'
29279 3' -55.5 NC_006150.1 + 109222 0.69 0.869747
Target:  5'- uGGCaGGUGAgGCGUucgaagGUGacggccggGGCGAGGGCu -3'
miRNA:   3'- -CCGcCUACU-CGCA------UACa-------CCGCUCCUG- -5'
29279 3' -55.5 NC_006150.1 + 220765 0.69 0.869747
Target:  5'- uGGUGGGagcuccggGAGCaUGUGUGG-GAGGAUg -3'
miRNA:   3'- -CCGCCUa-------CUCGcAUACACCgCUCCUG- -5'
29279 3' -55.5 NC_006150.1 + 202888 0.69 0.854907
Target:  5'- cGCGGGcgccucGGGCGguUGUGGCGcGGGCa -3'
miRNA:   3'- cCGCCUa-----CUCGCauACACCGCuCCUG- -5'
29279 3' -55.5 NC_006150.1 + 122729 0.7 0.847195
Target:  5'- -cUGGAUGAGgaCGagGUG-GGCGAGGACu -3'
miRNA:   3'- ccGCCUACUC--GCa-UACaCCGCUCCUG- -5'
29279 3' -55.5 NC_006150.1 + 183570 0.7 0.847195
Target:  5'- aGGCGGugGAGgGgg-GUGGCuAGGACg -3'
miRNA:   3'- -CCGCCuaCUCgCauaCACCGcUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.