miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2928 5' -55.2 NC_001493.1 + 26068 0.66 0.922118
Target:  5'- uGCGACaCAAGgucCACUCACCgaagcggcuaauggGUGCGa -3'
miRNA:   3'- gCGCUG-GUUUac-GUGGGUGGa-------------CACGC- -5'
2928 5' -55.2 NC_001493.1 + 88424 0.66 0.919854
Target:  5'- gCGCGACUcagggAGAUGgaGgCCACC-GUGCGg -3'
miRNA:   3'- -GCGCUGG-----UUUACg-UgGGUGGaCACGC- -5'
2928 5' -55.2 NC_001493.1 + 94440 0.66 0.919854
Target:  5'- aGCGACCGagcuacggGAUGU-CCUACgaGUGCu -3'
miRNA:   3'- gCGCUGGU--------UUACGuGGGUGgaCACGc -5'
2928 5' -55.2 NC_001493.1 + 33367 0.66 0.914024
Target:  5'- uCGCGAgCCucugGAUG-ACCCACCcgggugacgGUGCGa -3'
miRNA:   3'- -GCGCU-GGu---UUACgUGGGUGGa--------CACGC- -5'
2928 5' -55.2 NC_001493.1 + 101038 0.66 0.914024
Target:  5'- gGUGACC-AGUGuCACCgACCaagaGUGCa -3'
miRNA:   3'- gCGCUGGuUUAC-GUGGgUGGa---CACGc -5'
2928 5' -55.2 NC_001493.1 + 110150 0.66 0.901633
Target:  5'- gGCGA-CAAGUGCACCCcuCCgcUGCa -3'
miRNA:   3'- gCGCUgGUUUACGUGGGu-GGacACGc -5'
2928 5' -55.2 NC_001493.1 + 56541 0.66 0.895076
Target:  5'- gGCGACCGccAGUGCugCCgucgacgcgACgaGUGCc -3'
miRNA:   3'- gCGCUGGU--UUACGugGG---------UGgaCACGc -5'
2928 5' -55.2 NC_001493.1 + 102282 0.67 0.888284
Target:  5'- --gGGCCGccUGUGCCCGCCcgaccgaugcaUGUGCGg -3'
miRNA:   3'- gcgCUGGUuuACGUGGGUGG-----------ACACGC- -5'
2928 5' -55.2 NC_001493.1 + 61356 0.67 0.881259
Target:  5'- cCGCGACCcAGUcCAUCCcccgcuugGCCgGUGCGg -3'
miRNA:   3'- -GCGCUGGuUUAcGUGGG--------UGGaCACGC- -5'
2928 5' -55.2 NC_001493.1 + 28318 0.67 0.86653
Target:  5'- cCGCGAucaCCGAGgcgGCGaaCACgUGUGCGg -3'
miRNA:   3'- -GCGCU---GGUUUa--CGUggGUGgACACGC- -5'
2928 5' -55.2 NC_001493.1 + 108934 0.67 0.858838
Target:  5'- cCGUGAUCGGAgccGCGCCCGCUguccGCGu -3'
miRNA:   3'- -GCGCUGGUUUa--CGUGGGUGGaca-CGC- -5'
2928 5' -55.2 NC_001493.1 + 100339 0.68 0.834524
Target:  5'- gGCGcCCgAGAUGCACCUgucgcGCgUGUGCc -3'
miRNA:   3'- gCGCuGG-UUUACGUGGG-----UGgACACGc -5'
2928 5' -55.2 NC_001493.1 + 101284 0.68 0.834524
Target:  5'- cCGCGAUCGucuGUGCGCUCuuGCCaGUGUa -3'
miRNA:   3'- -GCGCUGGUu--UACGUGGG--UGGaCACGc -5'
2928 5' -55.2 NC_001493.1 + 42073 0.68 0.826031
Target:  5'- gGCGGCCccgGGAcGUGCCC-CCUGUGUc -3'
miRNA:   3'- gCGCUGG---UUUaCGUGGGuGGACACGc -5'
2928 5' -55.2 NC_001493.1 + 32570 0.68 0.826031
Target:  5'- uCGCGuACCGAGUGUuUCCuCCaGUGCGc -3'
miRNA:   3'- -GCGC-UGGUUUACGuGGGuGGaCACGC- -5'
2928 5' -55.2 NC_001493.1 + 27490 0.68 0.826031
Target:  5'- -uCGA-UAGAUGCACCCGCUUGUGg- -3'
miRNA:   3'- gcGCUgGUUUACGUGGGUGGACACgc -5'
2928 5' -55.2 NC_001493.1 + 95166 0.68 0.817356
Target:  5'- cCGUGACCAcgagauGAUGCGCCCACggaauCUGccGCc -3'
miRNA:   3'- -GCGCUGGU------UUACGUGGGUG-----GACa-CGc -5'
2928 5' -55.2 NC_001493.1 + 76342 0.68 0.817356
Target:  5'- -uUGAUCuuAUGCugCC-CCUGUGUGg -3'
miRNA:   3'- gcGCUGGuuUACGugGGuGGACACGC- -5'
2928 5' -55.2 NC_001493.1 + 56927 0.68 0.817356
Target:  5'- aCGUGACUGAGUGCACaccucgggCCACaCUGuUGUGu -3'
miRNA:   3'- -GCGCUGGUUUACGUG--------GGUG-GAC-ACGC- -5'
2928 5' -55.2 NC_001493.1 + 102141 0.69 0.790327
Target:  5'- gGCGGCCcuGaGCACCCgagggggaGCCUucgGUGCGa -3'
miRNA:   3'- gCGCUGGuuUaCGUGGG--------UGGA---CACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.