miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29282 5' -57.3 NC_006150.1 + 192815 0.66 0.926906
Target:  5'- uUCUGGCCAUACUaCUGCcagucaucUGU-CugGCc -3'
miRNA:   3'- gGGACCGGUGUGA-GACG--------ACGuGugCG- -5'
29282 5' -57.3 NC_006150.1 + 140848 0.66 0.926906
Target:  5'- ---aGGCCACugaUCUGUgcaggGCACGCGa -3'
miRNA:   3'- gggaCCGGUGug-AGACGa----CGUGUGCg -5'
29282 5' -57.3 NC_006150.1 + 221204 0.66 0.92639
Target:  5'- aCCgCUcGCCACACUCcugGCaGCAUcuccgcuACGCa -3'
miRNA:   3'- -GG-GAcCGGUGUGAGa--CGaCGUG-------UGCG- -5'
29282 5' -57.3 NC_006150.1 + 77645 0.66 0.921642
Target:  5'- cCCCUcGCCG---UCUGUUGCGCAaGCg -3'
miRNA:   3'- -GGGAcCGGUgugAGACGACGUGUgCG- -5'
29282 5' -57.3 NC_006150.1 + 52910 0.66 0.921642
Target:  5'- uUCUGguggugggauGCCugACUCUGCUGUcUACGg -3'
miRNA:   3'- gGGAC----------CGGugUGAGACGACGuGUGCg -5'
29282 5' -57.3 NC_006150.1 + 193548 0.66 0.921642
Target:  5'- gCC-GGUCugAgUCUGCUGUuCACGg -3'
miRNA:   3'- gGGaCCGGugUgAGACGACGuGUGCg -5'
29282 5' -57.3 NC_006150.1 + 135967 0.66 0.916154
Target:  5'- gUCUGGaCCGgcguaGCUCcgUGCUgGCACGCGUg -3'
miRNA:   3'- gGGACC-GGUg----UGAG--ACGA-CGUGUGCG- -5'
29282 5' -57.3 NC_006150.1 + 90753 0.66 0.916154
Target:  5'- ---gGGCCACACaacgggUUGCUGCGgAgGCu -3'
miRNA:   3'- gggaCCGGUGUGa-----GACGACGUgUgCG- -5'
29282 5' -57.3 NC_006150.1 + 168846 0.66 0.912753
Target:  5'- gCCCgugccGCCAucuugcuuuuuacacCACUCgGCgcacaUGCACACGCa -3'
miRNA:   3'- -GGGac---CGGU---------------GUGAGaCG-----ACGUGUGCG- -5'
29282 5' -57.3 NC_006150.1 + 154428 0.66 0.912753
Target:  5'- -aCUGGUCACAgaugaugCUGCUGCACuagaacugguuagagACGUg -3'
miRNA:   3'- ggGACCGGUGUga-----GACGACGUG---------------UGCG- -5'
29282 5' -57.3 NC_006150.1 + 119048 0.66 0.908685
Target:  5'- gCgUGGCCucaucCACUgcuucauccaggugCUGCUGCGCaaaGCGCc -3'
miRNA:   3'- gGgACCGGu----GUGA--------------GACGACGUG---UGCG- -5'
29282 5' -57.3 NC_006150.1 + 140116 0.66 0.904509
Target:  5'- aCUCcGGUcugCACGCUCUGUcGCACagagGCGCu -3'
miRNA:   3'- -GGGaCCG---GUGUGAGACGaCGUG----UGCG- -5'
29282 5' -57.3 NC_006150.1 + 117873 0.66 0.904509
Target:  5'- uCCC-GGCCAUGCUCUcCUGUugAaaGCg -3'
miRNA:   3'- -GGGaCCGGUGUGAGAcGACGugUg-CG- -5'
29282 5' -57.3 NC_006150.1 + 128764 0.67 0.891986
Target:  5'- aCCaaugUGGCCGCcCUCUGUcGUAaGCGCu -3'
miRNA:   3'- -GGg---ACCGGUGuGAGACGaCGUgUGCG- -5'
29282 5' -57.3 NC_006150.1 + 141070 0.67 0.885403
Target:  5'- gCCCUcGGCCagagGCACaugUUUGCUGUugaaaccaaAUACGCg -3'
miRNA:   3'- -GGGA-CCGG----UGUG---AGACGACG---------UGUGCG- -5'
29282 5' -57.3 NC_006150.1 + 595 0.67 0.878609
Target:  5'- gCUCgcGGCCACACcgUCUacaccgccgGCgcccgGCGCACGCu -3'
miRNA:   3'- -GGGa-CCGGUGUG--AGA---------CGa----CGUGUGCG- -5'
29282 5' -57.3 NC_006150.1 + 74198 0.67 0.871609
Target:  5'- aCCga-CCGCGaUCgGCUGCACAUGCa -3'
miRNA:   3'- gGGaccGGUGUgAGaCGACGUGUGCG- -5'
29282 5' -57.3 NC_006150.1 + 88543 0.67 0.871609
Target:  5'- uCCCUGGUCGCagccagGCUUccgUGCcgcccagccgaGCGCACGCu -3'
miRNA:   3'- -GGGACCGGUG------UGAG---ACGa----------CGUGUGCG- -5'
29282 5' -57.3 NC_006150.1 + 221193 0.67 0.864408
Target:  5'- gUCUGGCagGCACUCcgggGUggcGCGCugGCg -3'
miRNA:   3'- gGGACCGg-UGUGAGa---CGa--CGUGugCG- -5'
29282 5' -57.3 NC_006150.1 + 32654 0.68 0.849423
Target:  5'- gCCUcaGCUACuacCUCUGCUGuCAgACGCg -3'
miRNA:   3'- gGGAc-CGGUGu--GAGACGAC-GUgUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.