miRNA display CGI


Results 21 - 40 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29283 5' -56 NC_006150.1 + 95487 0.66 0.933591
Target:  5'- -cAGCGGCGgGCUuCGguuggGGCAGACUa -3'
miRNA:   3'- auUCGCCGUgCGGcGCa----UUGUCUGGg -5'
29283 5' -56 NC_006150.1 + 181559 0.66 0.933591
Target:  5'- aGAGaCGGCGCGaaacaCGCGUuugcACAG-CCUg -3'
miRNA:   3'- aUUC-GCCGUGCg----GCGCAu---UGUCuGGG- -5'
29283 5' -56 NC_006150.1 + 71063 0.66 0.933591
Target:  5'- -cAGCGGgCAagaggaggaGCCGCGUAuCAGugCg -3'
miRNA:   3'- auUCGCC-GUg--------CGGCGCAUuGUCugGg -5'
29283 5' -56 NC_006150.1 + 92671 0.66 0.933099
Target:  5'- -cGGCGuGCACGCCGCaccaucaucaaccGcAGCAGAaCUCg -3'
miRNA:   3'- auUCGC-CGUGCGGCG-------------CaUUGUCU-GGG- -5'
29283 5' -56 NC_006150.1 + 125404 0.66 0.933099
Target:  5'- -uGGCGGCGCGCCacguuucGCGUcuucuuGCGG-CCg -3'
miRNA:   3'- auUCGCCGUGCGG-------CGCAu-----UGUCuGGg -5'
29283 5' -56 NC_006150.1 + 56283 0.67 0.923317
Target:  5'- -cAGCugGGCACGuCUGCGcgcugAACGGugCCc -3'
miRNA:   3'- auUCG--CCGUGC-GGCGCa----UUGUCugGG- -5'
29283 5' -56 NC_006150.1 + 150635 0.67 0.918394
Target:  5'- --cGCGGCACacauuaucuacacaCGUGUaGAUAGACCCg -3'
miRNA:   3'- auuCGCCGUGcg------------GCGCA-UUGUCUGGG- -5'
29283 5' -56 NC_006150.1 + 34980 0.67 0.917835
Target:  5'- aUGAGCGGCAaaaGCCuccaGUAACuaaAGuCCCg -3'
miRNA:   3'- -AUUCGCCGUg--CGGcg--CAUUG---UCuGGG- -5'
29283 5' -56 NC_006150.1 + 8331 0.67 0.917835
Target:  5'- aGGGCGGCACuGaCUGCGcu---GGCCCa -3'
miRNA:   3'- aUUCGCCGUG-C-GGCGCauuguCUGGG- -5'
29283 5' -56 NC_006150.1 + 40210 0.67 0.917835
Target:  5'- ---aCGGCACGCCuucCGUGACAGAg-- -3'
miRNA:   3'- auucGCCGUGCGGc--GCAUUGUCUggg -5'
29283 5' -56 NC_006150.1 + 105605 0.67 0.917835
Target:  5'- -cAGCGGCugGCCcCGUGACA--UCUu -3'
miRNA:   3'- auUCGCCGugCGGcGCAUUGUcuGGG- -5'
29283 5' -56 NC_006150.1 + 122635 0.67 0.912126
Target:  5'- -cGGUGaCGCGCCGCugGAC-GACCCg -3'
miRNA:   3'- auUCGCcGUGCGGCGcaUUGuCUGGG- -5'
29283 5' -56 NC_006150.1 + 106301 0.67 0.912126
Target:  5'- -cGGCGGCugGaga-GUGACAG-CCCg -3'
miRNA:   3'- auUCGCCGugCggcgCAUUGUCuGGG- -5'
29283 5' -56 NC_006150.1 + 118936 0.67 0.912126
Target:  5'- ----aGGCACGCCGCGcu-CAG-CUCg -3'
miRNA:   3'- auucgCCGUGCGGCGCauuGUCuGGG- -5'
29283 5' -56 NC_006150.1 + 110524 0.67 0.912126
Target:  5'- -cGGUGugguGCACGCCGUGUGGCA--UCCa -3'
miRNA:   3'- auUCGC----CGUGCGGCGCAUUGUcuGGG- -5'
29283 5' -56 NC_006150.1 + 142839 0.67 0.912126
Target:  5'- --cGUGGcCAUGUcuCGgGUGACGGAUCCg -3'
miRNA:   3'- auuCGCC-GUGCG--GCgCAUUGUCUGGG- -5'
29283 5' -56 NC_006150.1 + 70083 0.68 0.900026
Target:  5'- -uGGCGGUgGCGCUGCGUGG-AGGCUUg -3'
miRNA:   3'- auUCGCCG-UGCGGCGCAUUgUCUGGG- -5'
29283 5' -56 NC_006150.1 + 171471 0.68 0.893641
Target:  5'- ----aGGC-CGCCGCGccACAGACaCCc -3'
miRNA:   3'- auucgCCGuGCGGCGCauUGUCUG-GG- -5'
29283 5' -56 NC_006150.1 + 148454 0.68 0.893641
Target:  5'- --uGCGuuCAUGCCGCucGgcACGGGCCCg -3'
miRNA:   3'- auuCGCc-GUGCGGCG--CauUGUCUGGG- -5'
29283 5' -56 NC_006150.1 + 217611 0.68 0.893641
Target:  5'- cUGAGCGugaaACGCCuGCGUAcuCGGACUCa -3'
miRNA:   3'- -AUUCGCcg--UGCGG-CGCAUu-GUCUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.