miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29284 5' -45.1 NC_006150.1 + 206559 0.66 1
Target:  5'- cGUCCGCauacagacaguaguaGCGAGGagGgagggGACGAAGAUg -3'
miRNA:   3'- -CAGGCG---------------UGCUUCaaCa----CUGUUUUUAg -5'
29284 5' -45.1 NC_006150.1 + 217749 0.66 1
Target:  5'- -cUCGuCACGAAGUUGUG-CAAGc--- -3'
miRNA:   3'- caGGC-GUGCUUCAACACuGUUUuuag -5'
29284 5' -45.1 NC_006150.1 + 119863 0.66 1
Target:  5'- uGUCCGUGCGGuucaUUG-GACAGAcggGAUCg -3'
miRNA:   3'- -CAGGCGUGCUuc--AACaCUGUUU---UUAG- -5'
29284 5' -45.1 NC_006150.1 + 108774 0.66 0.999999
Target:  5'- -aCCGCGCuGAGGUgaUGUGGCGc----- -3'
miRNA:   3'- caGGCGUG-CUUCA--ACACUGUuuuuag -5'
29284 5' -45.1 NC_006150.1 + 119615 0.66 0.999999
Target:  5'- -gCCGCGCGAcacugaaagacGGUUGgcGACGAAGccAUCc -3'
miRNA:   3'- caGGCGUGCU-----------UCAACa-CUGUUUU--UAG- -5'
29284 5' -45.1 NC_006150.1 + 171219 0.66 0.999999
Target:  5'- aGUCUGCGCGGGuGUcUGUGGCGc----- -3'
miRNA:   3'- -CAGGCGUGCUU-CA-ACACUGUuuuuag -5'
29284 5' -45.1 NC_006150.1 + 219794 0.67 0.999998
Target:  5'- cGUCCGagGCGGGcgcGUUGUGGCGuGAAUg -3'
miRNA:   3'- -CAGGCg-UGCUU---CAACACUGUuUUUAg -5'
29284 5' -45.1 NC_006150.1 + 30041 0.67 0.999998
Target:  5'- uUCUGCAUGAugcugcuGUUG-GACuGAAGUCa -3'
miRNA:   3'- cAGGCGUGCUu------CAACaCUGuUUUUAG- -5'
29284 5' -45.1 NC_006150.1 + 85875 0.67 0.999995
Target:  5'- uGUUCGCAcCGAAGU----GCAAAAAUCu -3'
miRNA:   3'- -CAGGCGU-GCUUCAacacUGUUUUUAG- -5'
29284 5' -45.1 NC_006150.1 + 206151 0.68 0.999986
Target:  5'- -aCCGCACGcGAGa-GUGuCGAGAGUCu -3'
miRNA:   3'- caGGCGUGC-UUCaaCACuGUUUUUAG- -5'
29284 5' -45.1 NC_006150.1 + 156662 0.68 0.999986
Target:  5'- gGUCCGCAagacugcaGAGGcUUGUGcCAGugGAAUCa -3'
miRNA:   3'- -CAGGCGUg-------CUUC-AACACuGUU--UUUAG- -5'
29284 5' -45.1 NC_006150.1 + 85994 0.69 0.999969
Target:  5'- -gCCGCACGggGaggugcagcgauuaUGUGACGAAAc-- -3'
miRNA:   3'- caGGCGUGCuuCa-------------ACACUGUUUUuag -5'
29284 5' -45.1 NC_006150.1 + 29125 0.69 0.999964
Target:  5'- -cCCGCACagguGGUUGUGACcugacauGAUCg -3'
miRNA:   3'- caGGCGUGcu--UCAACACUGuuu----UUAG- -5'
29284 5' -45.1 NC_006150.1 + 94485 0.69 0.999952
Target:  5'- aGUCCuGCAaGAAGUUG-GGCAGGGAg- -3'
miRNA:   3'- -CAGG-CGUgCUUCAACaCUGUUUUUag -5'
29284 5' -45.1 NC_006150.1 + 84451 0.7 0.999855
Target:  5'- gGUUCGCAUGAaaagcAGUcGUGACGAAGuGUCc -3'
miRNA:   3'- -CAGGCGUGCU-----UCAaCACUGUUUU-UAG- -5'
29284 5' -45.1 NC_006150.1 + 36833 1.12 0.030956
Target:  5'- gGUCCGCACGAAGUUGUGACAAAAAUCa -3'
miRNA:   3'- -CAGGCGUGCUUCAACACUGUUUUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.