miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29285 3' -49.2 NC_006150.1 + 140893 0.66 0.999681
Target:  5'- gGCAcCGGCCGUgccGGUcaCCAGAA--GCg -3'
miRNA:   3'- -UGU-GUCGGCAa--CCAcaGGUCUUuuUG- -5'
29285 3' -49.2 NC_006150.1 + 176509 0.66 0.999681
Target:  5'- -aACAGCuCGUUGuucgauaccGUCCAGAGAGAa -3'
miRNA:   3'- ugUGUCG-GCAACca-------CAGGUCUUUUUg -5'
29285 3' -49.2 NC_006150.1 + 84438 0.66 0.999599
Target:  5'- -aGCAGUCGUgacgaaGUGUCCGGGGccACg -3'
miRNA:   3'- ugUGUCGGCAac----CACAGGUCUUuuUG- -5'
29285 3' -49.2 NC_006150.1 + 167150 0.66 0.999499
Target:  5'- ---gAGCCGUacUGGUGaagCCAGAGAc-- -3'
miRNA:   3'- ugugUCGGCA--ACCACa--GGUCUUUuug -5'
29285 3' -49.2 NC_006150.1 + 153102 0.67 0.999062
Target:  5'- aACAUGGUucaCGUcuUGGuUGUCCGGAGGGAUc -3'
miRNA:   3'- -UGUGUCG---GCA--ACC-ACAGGUCUUUUUG- -5'
29285 3' -49.2 NC_006150.1 + 187356 0.67 0.998857
Target:  5'- cCGCGGaCUGUuugGGUGUCCA--AAAACa -3'
miRNA:   3'- uGUGUC-GGCAa--CCACAGGUcuUUUUG- -5'
29285 3' -49.2 NC_006150.1 + 927 0.67 0.998535
Target:  5'- gGCGgGGCgCGUUGGUGUUgacucagcgcagagCAGuGAAGCg -3'
miRNA:   3'- -UGUgUCG-GCAACCACAG--------------GUCuUUUUG- -5'
29285 3' -49.2 NC_006150.1 + 67239 0.67 0.998331
Target:  5'- gGC-CAGCCGUuacUGG-GUUUAGGAGAAa -3'
miRNA:   3'- -UGuGUCGGCA---ACCaCAGGUCUUUUUg -5'
29285 3' -49.2 NC_006150.1 + 118217 0.68 0.997169
Target:  5'- uACACGuGCCugUGGUGuUCCAGGGcuACg -3'
miRNA:   3'- -UGUGU-CGGcaACCAC-AGGUCUUuuUG- -5'
29285 3' -49.2 NC_006150.1 + 148050 0.68 0.996657
Target:  5'- aGCGCAGUCG-UGGUgcccucaccGUCCAGGcaccGGACg -3'
miRNA:   3'- -UGUGUCGGCaACCA---------CAGGUCUu---UUUG- -5'
29285 3' -49.2 NC_006150.1 + 140659 0.68 0.996071
Target:  5'- gGCACGGCC---GGUG-CCGGcAAGACg -3'
miRNA:   3'- -UGUGUCGGcaaCCACaGGUCuUUUUG- -5'
29285 3' -49.2 NC_006150.1 + 86303 0.72 0.955726
Target:  5'- uCGCGGCCaUccaugcgccaccUGGUGUCCGcGAAAAACa -3'
miRNA:   3'- uGUGUCGGcA------------ACCACAGGU-CUUUUUG- -5'
29285 3' -49.2 NC_006150.1 + 37255 1.11 0.01278
Target:  5'- cACACAGCCGUUGGUGUCCAGAAAAACg -3'
miRNA:   3'- -UGUGUCGGCAACCACAGGUCUUUUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.