miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29285 5' -54.8 NC_006150.1 + 82002 0.66 0.974102
Target:  5'- -cACCGGCcgUCGAgCCAGUgCGAUGugAa -3'
miRNA:   3'- acUGGCCG--AGCUaGGUCG-GUUACugU- -5'
29285 5' -54.8 NC_006150.1 + 210056 0.66 0.971404
Target:  5'- gUGAUCGGggCGAUCCAGaCUAGaGAUc -3'
miRNA:   3'- -ACUGGCCgaGCUAGGUC-GGUUaCUGu -5'
29285 5' -54.8 NC_006150.1 + 193321 0.66 0.965411
Target:  5'- aGACCGGCUgUGAUUCcaucggugcaaaAGCUGAUGAgGg -3'
miRNA:   3'- aCUGGCCGA-GCUAGG------------UCGGUUACUgU- -5'
29285 5' -54.8 NC_006150.1 + 106129 0.66 0.958586
Target:  5'- -aACCaGCUCGcacauucuugaGUCCGGCCAcAUGACc -3'
miRNA:   3'- acUGGcCGAGC-----------UAGGUCGGU-UACUGu -5'
29285 5' -54.8 NC_006150.1 + 205200 0.67 0.949659
Target:  5'- gGAUUGGUUCGGagcgguguacgccaUCCAGCuCGAUGAg- -3'
miRNA:   3'- aCUGGCCGAGCU--------------AGGUCG-GUUACUgu -5'
29285 5' -54.8 NC_006150.1 + 133925 0.67 0.942293
Target:  5'- aGACCGGUgugccuUCGGUCUuuuGCCGAUauaGAUAa -3'
miRNA:   3'- aCUGGCCG------AGCUAGGu--CGGUUA---CUGU- -5'
29285 5' -54.8 NC_006150.1 + 81761 0.68 0.916746
Target:  5'- cGcACUGGCUCGA--CGGCCGGUGGa- -3'
miRNA:   3'- aC-UGGCCGAGCUagGUCGGUUACUgu -5'
29285 5' -54.8 NC_006150.1 + 125679 0.69 0.885416
Target:  5'- gGAUCGGCcCGAUCCcucguuGCUcAUGACGg -3'
miRNA:   3'- aCUGGCCGaGCUAGGu-----CGGuUACUGU- -5'
29285 5' -54.8 NC_006150.1 + 142274 0.7 0.8564
Target:  5'- aUGAUCGGUaaaUCGAUCCGGcCCAAUucucGCAa -3'
miRNA:   3'- -ACUGGCCG---AGCUAGGUC-GGUUAc---UGU- -5'
29285 5' -54.8 NC_006150.1 + 142393 0.7 0.832539
Target:  5'- aGGCCGGUUCGccgCCuuGCCGAUGGu- -3'
miRNA:   3'- aCUGGCCGAGCua-GGu-CGGUUACUgu -5'
29285 5' -54.8 NC_006150.1 + 207242 0.7 0.832539
Target:  5'- aUGugUGGC---GUCUGGCCGAUGACAu -3'
miRNA:   3'- -ACugGCCGagcUAGGUCGGUUACUGU- -5'
29285 5' -54.8 NC_006150.1 + 140714 0.74 0.663506
Target:  5'- cGAUCcGCUCGAUCuUAGCCGcgGACGa -3'
miRNA:   3'- aCUGGcCGAGCUAG-GUCGGUuaCUGU- -5'
29285 5' -54.8 NC_006150.1 + 37289 1.09 0.005229
Target:  5'- uUGACCGGCUCGAUCCAGCCAAUGACAg -3'
miRNA:   3'- -ACUGGCCGAGCUAGGUCGGUUACUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.