miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29288 3' -54.4 NC_006150.1 + 117068 0.66 0.97538
Target:  5'- gGCCgCCAUGCggGGCAcgUCCGaaacuccaugauggcGAGACu -3'
miRNA:   3'- -UGGgGGUAUGa-CCGUa-AGGU---------------CUCUGu -5'
29288 3' -54.4 NC_006150.1 + 157118 0.66 0.962315
Target:  5'- aGCCCCCAUGauacCUaGCAcUUCCAaGGGCAa -3'
miRNA:   3'- -UGGGGGUAU----GAcCGU-AAGGUcUCUGU- -5'
29288 3' -54.4 NC_006150.1 + 32643 0.67 0.958778
Target:  5'- uACCUCUgcugucagacgcGU-CUGGCGUUCCuGGGGCGu -3'
miRNA:   3'- -UGGGGG------------UAuGACCGUAAGGuCUCUGU- -5'
29288 3' -54.4 NC_006150.1 + 103031 0.67 0.955019
Target:  5'- uGCgCCCCAUAucCUGGCAggcUCUGGAuGACc -3'
miRNA:   3'- -UG-GGGGUAU--GACCGUa--AGGUCU-CUGu -5'
29288 3' -54.4 NC_006150.1 + 113248 0.67 0.951035
Target:  5'- aGCCCCCAUGC--GCGUcucuaaccccagUCCAGAaacGGCAc -3'
miRNA:   3'- -UGGGGGUAUGacCGUA------------AGGUCU---CUGU- -5'
29288 3' -54.4 NC_006150.1 + 174291 0.67 0.942375
Target:  5'- cACCUCCAUAUcaaucaUGGUGUgUCCcGAGGCAg -3'
miRNA:   3'- -UGGGGGUAUG------ACCGUA-AGGuCUCUGU- -5'
29288 3' -54.4 NC_006150.1 + 40430 0.69 0.877932
Target:  5'- cGCCUCCAUGgUGGUGUaUCCcgacGAGACGg -3'
miRNA:   3'- -UGGGGGUAUgACCGUA-AGGu---CUCUGU- -5'
29288 3' -54.4 NC_006150.1 + 113940 0.7 0.863256
Target:  5'- cGCCCUC-UGCUGGCAcaCCgcagagGGAGGCAu -3'
miRNA:   3'- -UGGGGGuAUGACCGUaaGG------UCUCUGU- -5'
29288 3' -54.4 NC_006150.1 + 167139 0.7 0.83147
Target:  5'- uACCacagggugagCCGUACUGGUGaagCCAGAGACAg -3'
miRNA:   3'- -UGGg---------GGUAUGACCGUaa-GGUCUCUGU- -5'
29288 3' -54.4 NC_006150.1 + 160154 0.72 0.778552
Target:  5'- uACCCaCgGUGCUGGCcg-CCAGuGGCAu -3'
miRNA:   3'- -UGGG-GgUAUGACCGuaaGGUCuCUGU- -5'
29288 3' -54.4 NC_006150.1 + 50361 1.09 0.005689
Target:  5'- cACCCCCAUACUGGCAUUCCAGAGACAa -3'
miRNA:   3'- -UGGGGGUAUGACCGUAAGGUCUCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.