miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29289 3' -54.7 NC_006150.1 + 96508 0.66 0.980713
Target:  5'- aCACCGGAuUCa--CCCacaugCCCGAACa -3'
miRNA:   3'- cGUGGCCUuAGaacGGGa----GGGCUUGc -5'
29289 3' -54.7 NC_006150.1 + 142386 0.66 0.971042
Target:  5'- cCACCGGAGgccgguUCgccGCCUUgCCGAugGu -3'
miRNA:   3'- cGUGGCCUU------AGaa-CGGGAgGGCUugC- -5'
29289 3' -54.7 NC_006150.1 + 88880 0.67 0.965079
Target:  5'- gGCGCUGGug----GCCUccucgUCCCGGGCGg -3'
miRNA:   3'- -CGUGGCCuuagaaCGGG-----AGGGCUUGC- -5'
29289 3' -54.7 NC_006150.1 + 1285 0.67 0.958303
Target:  5'- aGCACCGccgaacacGAAUCcgGCaCCUgCCGAGCu -3'
miRNA:   3'- -CGUGGC--------CUUAGaaCG-GGAgGGCUUGc -5'
29289 3' -54.7 NC_006150.1 + 171936 0.67 0.958303
Target:  5'- cGCAUCGG---UUUGuUCCUCCUGAAUGg -3'
miRNA:   3'- -CGUGGCCuuaGAAC-GGGAGGGCUUGC- -5'
29289 3' -54.7 NC_006150.1 + 83069 0.67 0.954599
Target:  5'- aGCGCUGucgcaugaauuuGuAAUCUUGCCCUCCCa---- -3'
miRNA:   3'- -CGUGGC------------C-UUAGAACGGGAGGGcuugc -5'
29289 3' -54.7 NC_006150.1 + 109540 0.68 0.950677
Target:  5'- cGCAUCauGGAUC--GCCCUCCCGAGg- -3'
miRNA:   3'- -CGUGGc-CUUAGaaCGGGAGGGCUUgc -5'
29289 3' -54.7 NC_006150.1 + 51432 0.68 0.946536
Target:  5'- aGCGCCG---UCUUGCCCaacacagaagCCUGAAUGa -3'
miRNA:   3'- -CGUGGCcuuAGAACGGGa---------GGGCUUGC- -5'
29289 3' -54.7 NC_006150.1 + 117770 0.68 0.927726
Target:  5'- aGCACCGuGA--CaUGCCCcaacuaUCCCGAACu -3'
miRNA:   3'- -CGUGGC-CUuaGaACGGG------AGGGCUUGc -5'
29289 3' -54.7 NC_006150.1 + 115100 0.69 0.916957
Target:  5'- -aACUGGAAUCUcGUCCUUCCGuGGCu -3'
miRNA:   3'- cgUGGCCUUAGAaCGGGAGGGC-UUGc -5'
29289 3' -54.7 NC_006150.1 + 154842 0.71 0.825923
Target:  5'- gGCACCGGGcacguUCUgGCCCUCgCGGcCGc -3'
miRNA:   3'- -CGUGGCCUu----AGAaCGGGAGgGCUuGC- -5'
29289 3' -54.7 NC_006150.1 + 183907 0.73 0.758828
Target:  5'- uGCGCCGGccaacUCUccggccgugggagaaUGUCCUCCgCGAGCGg -3'
miRNA:   3'- -CGUGGCCuu---AGA---------------ACGGGAGG-GCUUGC- -5'
29289 3' -54.7 NC_006150.1 + 50872 1.12 0.004318
Target:  5'- gGCACCGGAAUCUUGCCCUCCCGAACGg -3'
miRNA:   3'- -CGUGGCCUUAGAACGGGAGGGCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.