miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29289 5' -55.7 NC_006150.1 + 133128 0.66 0.946649
Target:  5'- cGCGUaCCGGUucccGGC-CGUGCAUGACg -3'
miRNA:   3'- cCGCA-GGUCGuc--CCGaGCGUGUAUUG- -5'
29289 5' -55.7 NC_006150.1 + 115953 0.66 0.942253
Target:  5'- gGGCGUCCAaccGCGGcucGCUCGCcgACAUcAUg -3'
miRNA:   3'- -CCGCAGGU---CGUCc--CGAGCG--UGUAuUG- -5'
29289 5' -55.7 NC_006150.1 + 53980 0.66 0.942253
Target:  5'- cGGCGUUCuuCAGGGCUgGCGuucuGCg -3'
miRNA:   3'- -CCGCAGGucGUCCCGAgCGUguauUG- -5'
29289 5' -55.7 NC_006150.1 + 64 0.66 0.939505
Target:  5'- cGGgGUCCAGCacagcagacagacacGGGGCacugggaaaGCACAgAACa -3'
miRNA:   3'- -CCgCAGGUCG---------------UCCCGag-------CGUGUaUUG- -5'
29289 5' -55.7 NC_006150.1 + 131862 0.66 0.937628
Target:  5'- aGGgGUCgaaaGGCAGGGUgauagcacUCGCGCAa--- -3'
miRNA:   3'- -CCgCAGg---UCGUCCCG--------AGCGUGUauug -5'
29289 5' -55.7 NC_006150.1 + 129884 0.67 0.932772
Target:  5'- aGGCGggCCAcGUAGGGacCUCGCGCcccACg -3'
miRNA:   3'- -CCGCa-GGU-CGUCCC--GAGCGUGuauUG- -5'
29289 5' -55.7 NC_006150.1 + 150063 0.67 0.927686
Target:  5'- cGCGgCCAGCcaGGCUCGCACc---- -3'
miRNA:   3'- cCGCaGGUCGucCCGAGCGUGuauug -5'
29289 5' -55.7 NC_006150.1 + 116570 0.67 0.922367
Target:  5'- uGGCGUUCAucCAGGuuUCGCGC-UGACa -3'
miRNA:   3'- -CCGCAGGUc-GUCCcgAGCGUGuAUUG- -5'
29289 5' -55.7 NC_006150.1 + 182349 0.68 0.89879
Target:  5'- uGCGUaugcCCAGC-GGGUUCGgGCcgAACa -3'
miRNA:   3'- cCGCA----GGUCGuCCCGAGCgUGuaUUG- -5'
29289 5' -55.7 NC_006150.1 + 217609 0.68 0.89879
Target:  5'- uGCG-CCAgcGCAGGGCggUGCGCucuUGGCg -3'
miRNA:   3'- cCGCaGGU--CGUCCCGa-GCGUGu--AUUG- -5'
29289 5' -55.7 NC_006150.1 + 117058 0.68 0.89233
Target:  5'- cGGCGUCCAuggccgccauGCGGGGCaCGUcCGaAACu -3'
miRNA:   3'- -CCGCAGGU----------CGUCCCGaGCGuGUaUUG- -5'
29289 5' -55.7 NC_006150.1 + 150227 0.68 0.89233
Target:  5'- uGGCGUUCGGCAcccugcccGGGCaggUCGCGCc---- -3'
miRNA:   3'- -CCGCAGGUCGU--------CCCG---AGCGUGuauug -5'
29289 5' -55.7 NC_006150.1 + 115054 0.68 0.885647
Target:  5'- cGGCGUCauguuucgUAGCAGacuGCgaaggCGCGCAUAGCc -3'
miRNA:   3'- -CCGCAG--------GUCGUCc--CGa----GCGUGUAUUG- -5'
29289 5' -55.7 NC_006150.1 + 82040 0.68 0.878748
Target:  5'- aGCG-CCuGCAGGGCUUGCucuGCAa--- -3'
miRNA:   3'- cCGCaGGuCGUCCCGAGCG---UGUauug -5'
29289 5' -55.7 NC_006150.1 + 58828 0.69 0.864315
Target:  5'- cGGCG-CCGGC-GGGCUCGagGCGgucauGCa -3'
miRNA:   3'- -CCGCaGGUCGuCCCGAGCg-UGUau---UG- -5'
29289 5' -55.7 NC_006150.1 + 124390 0.69 0.864315
Target:  5'- uGGCGgaacuaaaUCGGCuGGGCgugUCGCAUGUAACc -3'
miRNA:   3'- -CCGCa-------GGUCGuCCCG---AGCGUGUAUUG- -5'
29289 5' -55.7 NC_006150.1 + 117871 0.69 0.852182
Target:  5'- uGGCGcCCAGCGccuuucaagaacuacGuGcCUCGCACAUAGCc -3'
miRNA:   3'- -CCGCaGGUCGU---------------CcC-GAGCGUGUAUUG- -5'
29289 5' -55.7 NC_006150.1 + 217912 0.69 0.833065
Target:  5'- uGGUGUCgcUAGCGcGGCUCGCGCuguaAACa -3'
miRNA:   3'- -CCGCAG--GUCGUcCCGAGCGUGua--UUG- -5'
29289 5' -55.7 NC_006150.1 + 46315 0.7 0.824793
Target:  5'- uGGCGUCUacgGGCAGGGCUgGgAUc-GACg -3'
miRNA:   3'- -CCGCAGG---UCGUCCCGAgCgUGuaUUG- -5'
29289 5' -55.7 NC_006150.1 + 129086 0.7 0.819748
Target:  5'- uGGUGUCUGGguGGaaaguuccaccauccGCUCcaccGCACAUAACg -3'
miRNA:   3'- -CCGCAGGUCguCC---------------CGAG----CGUGUAUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.