miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2929 3' -57.6 NC_001493.1 + 30898 0.66 0.829774
Target:  5'- uCGC--CCCCAuGCcacCGGUCACGGCg -3'
miRNA:   3'- uGCGuuGGGGU-CGagaGCCAGUGCUG- -5'
2929 3' -57.6 NC_001493.1 + 57869 0.66 0.828935
Target:  5'- gAUGCGACCCCauaugugGGaCUCUuaUGGUCACaGCc -3'
miRNA:   3'- -UGCGUUGGGG-------UC-GAGA--GCCAGUGcUG- -5'
2929 3' -57.6 NC_001493.1 + 102467 0.66 0.8213
Target:  5'- gUGgGGCCUCGGCgggUCggggGGUCGCGACg -3'
miRNA:   3'- uGCgUUGGGGUCG---AGag--CCAGUGCUG- -5'
2929 3' -57.6 NC_001493.1 + 120308 0.66 0.8213
Target:  5'- cACGgGuccGCCuCCAGCUCUUcuccguguucgGGUUugGGCa -3'
miRNA:   3'- -UGCgU---UGG-GGUCGAGAG-----------CCAGugCUG- -5'
2929 3' -57.6 NC_001493.1 + 4754 0.66 0.8213
Target:  5'- cACGgGuccGCCuCCAGCUCUUcuccguguucgGGUUugGGCa -3'
miRNA:   3'- -UGCgU---UGG-GGUCGAGAG-----------CCAGugCUG- -5'
2929 3' -57.6 NC_001493.1 + 35627 0.66 0.812654
Target:  5'- cACGCAGCUCCGaacuaCUCUaCGGUCucgccgggguguACGACc -3'
miRNA:   3'- -UGCGUUGGGGUc----GAGA-GCCAG------------UGCUG- -5'
2929 3' -57.6 NC_001493.1 + 90124 0.66 0.804732
Target:  5'- uGCGCGACCCCGGaggugaacgauauaCUCaacGUCGCGAg -3'
miRNA:   3'- -UGCGUUGGGGUCga------------GAGc--CAGUGCUg -5'
2929 3' -57.6 NC_001493.1 + 79249 0.66 0.803844
Target:  5'- -aGCAACaCCAGCUUcgCGGaCACGAa -3'
miRNA:   3'- ugCGUUGgGGUCGAGa-GCCaGUGCUg -5'
2929 3' -57.6 NC_001493.1 + 45037 0.66 0.794879
Target:  5'- cGCGCAGCaCCCGGCggUCaUGGggaCGCGAg -3'
miRNA:   3'- -UGCGUUG-GGGUCG--AGaGCCa--GUGCUg -5'
2929 3' -57.6 NC_001493.1 + 13200 0.67 0.786684
Target:  5'- -gGCGACCCCGGCgaacaccagggaGGUCACcACg -3'
miRNA:   3'- ugCGUUGGGGUCGagag--------CCAGUGcUG- -5'
2929 3' -57.6 NC_001493.1 + 128754 0.67 0.786684
Target:  5'- -gGCGACCCCGGCgaacaccagggaGGUCACcACg -3'
miRNA:   3'- ugCGUUGGGGUCGagag--------CCAGUGcUG- -5'
2929 3' -57.6 NC_001493.1 + 1448 0.67 0.785766
Target:  5'- uCGCGugCaCCuuuGCgacCUCGGUCACGuCa -3'
miRNA:   3'- uGCGUugG-GGu--CGa--GAGCCAGUGCuG- -5'
2929 3' -57.6 NC_001493.1 + 117002 0.67 0.785766
Target:  5'- uCGCGugCaCCuuuGCgacCUCGGUCACGuCa -3'
miRNA:   3'- uGCGUugG-GGu--CGa--GAGCCAGUGCuG- -5'
2929 3' -57.6 NC_001493.1 + 129938 0.67 0.757636
Target:  5'- -aGCGGCCCCcGCgucgCUCaGUCGCccGACg -3'
miRNA:   3'- ugCGUUGGGGuCGa---GAGcCAGUG--CUG- -5'
2929 3' -57.6 NC_001493.1 + 14384 0.67 0.757636
Target:  5'- -aGCGGCCCCcGCgucgCUCaGUCGCccGACg -3'
miRNA:   3'- ugCGUUGGGGuCGa---GAGcCAGUG--CUG- -5'
2929 3' -57.6 NC_001493.1 + 9085 0.67 0.738313
Target:  5'- aGCGCGACCCgGGuCUUuugcgCGGUCaACGGg -3'
miRNA:   3'- -UGCGUUGGGgUC-GAGa----GCCAG-UGCUg -5'
2929 3' -57.6 NC_001493.1 + 46398 0.67 0.738313
Target:  5'- -gGCAACCCCGGgUgagacCUCGGgCAcCGGCg -3'
miRNA:   3'- ugCGUUGGGGUCgA-----GAGCCaGU-GCUG- -5'
2929 3' -57.6 NC_001493.1 + 124640 0.67 0.738313
Target:  5'- aGCGCGACCCgGGuCUUuugcgCGGUCaACGGg -3'
miRNA:   3'- -UGCGUUGGGgUC-GAGa----GCCAG-UGCUg -5'
2929 3' -57.6 NC_001493.1 + 22142 0.68 0.71862
Target:  5'- aGCGCGauuacACCCCGcccaCUCaUCGGUC-CGACu -3'
miRNA:   3'- -UGCGU-----UGGGGUc---GAG-AGCCAGuGCUG- -5'
2929 3' -57.6 NC_001493.1 + 111985 0.68 0.717627
Target:  5'- uCGCAgacuccgACCCCAGUUCU-GGUUACaGAUg -3'
miRNA:   3'- uGCGU-------UGGGGUCGAGAgCCAGUG-CUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.