miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2929 5' -56.5 NC_001493.1 + 126314 0.66 0.900287
Target:  5'- uGGCCGugUCGuGGGCaucgGCGAUCGG-CCa -3'
miRNA:   3'- cCCGGC--AGCuCCCGg---UGUUGGUUaGG- -5'
2929 5' -56.5 NC_001493.1 + 33541 0.66 0.900287
Target:  5'- -aGCCGUCGuGcaCCACAuACCAAUCa -3'
miRNA:   3'- ccCGGCAGCuCccGGUGU-UGGUUAGg -5'
2929 5' -56.5 NC_001493.1 + 34215 0.66 0.900287
Target:  5'- uGGUgaUgGAGGGCCGCGguGCCGG-CCg -3'
miRNA:   3'- cCCGgcAgCUCCCGGUGU--UGGUUaGG- -5'
2929 5' -56.5 NC_001493.1 + 43882 0.66 0.900287
Target:  5'- uGGGCCG-CGAcggucugagGGGCCGucACCAGg-- -3'
miRNA:   3'- -CCCGGCaGCU---------CCCGGUguUGGUUagg -5'
2929 5' -56.5 NC_001493.1 + 10760 0.66 0.900287
Target:  5'- uGGCCGugUCGuGGGCaucgGCGAUCGG-CCa -3'
miRNA:   3'- cCCGGC--AGCuCCCGg---UGUUGGUUaGG- -5'
2929 5' -56.5 NC_001493.1 + 101912 0.66 0.893817
Target:  5'- uGGGCuCGgaGAGGGUgcUACGACCGGacguucUCCu -3'
miRNA:   3'- -CCCG-GCagCUCCCG--GUGUUGGUU------AGG- -5'
2929 5' -56.5 NC_001493.1 + 92975 0.66 0.893817
Target:  5'- -cGCCGUCGgguGGGGCgAgcuCGACCGugagcGUCCc -3'
miRNA:   3'- ccCGGCAGC---UCCCGgU---GUUGGU-----UAGG- -5'
2929 5' -56.5 NC_001493.1 + 79085 0.66 0.887121
Target:  5'- cGGGagcaCGUCGGGcGGUC-UGACCGAggCCg -3'
miRNA:   3'- -CCCg---GCAGCUC-CCGGuGUUGGUUa-GG- -5'
2929 5' -56.5 NC_001493.1 + 82093 0.66 0.887121
Target:  5'- cGGaGCuCGUCGAGGGUCuucuCcGCCcuggCCa -3'
miRNA:   3'- -CC-CG-GCAGCUCCCGGu---GuUGGuua-GG- -5'
2929 5' -56.5 NC_001493.1 + 100642 0.66 0.887121
Target:  5'- aGGCCGUcaaCGAGGGauuCGgAACggCGGUCCa -3'
miRNA:   3'- cCCGGCA---GCUCCCg--GUgUUG--GUUAGG- -5'
2929 5' -56.5 NC_001493.1 + 39609 0.66 0.880203
Target:  5'- gGGGCCGaucgucgcucuUCGAGc-CCAuCAACUggUCCa -3'
miRNA:   3'- -CCCGGC-----------AGCUCccGGU-GUUGGuuAGG- -5'
2929 5' -56.5 NC_001493.1 + 78537 0.66 0.880203
Target:  5'- cGGGgCGUCGAGGGCgagugucuucUGCAggucuaugaACCAcUCUc -3'
miRNA:   3'- -CCCgGCAGCUCCCG----------GUGU---------UGGUuAGG- -5'
2929 5' -56.5 NC_001493.1 + 15873 0.66 0.880203
Target:  5'- aGGUCGggGAGcGGUCGCAcggccgugcgcAUCAAUCCa -3'
miRNA:   3'- cCCGGCagCUC-CCGGUGU-----------UGGUUAGG- -5'
2929 5' -56.5 NC_001493.1 + 19628 0.66 0.880203
Target:  5'- gGGGCCGUCuuGAGcgucGCCAUAcCCGuUCUg -3'
miRNA:   3'- -CCCGGCAG--CUCc---CGGUGUuGGUuAGG- -5'
2929 5' -56.5 NC_001493.1 + 131427 0.66 0.880203
Target:  5'- aGGUCGggGAGcGGUCGCAcggccgugcgcAUCAAUCCa -3'
miRNA:   3'- cCCGGCagCUC-CCGGUGU-----------UGGUUAGG- -5'
2929 5' -56.5 NC_001493.1 + 94504 0.66 0.873067
Target:  5'- gGGGCCGU-GAGGucguaCCACG--CGAUCCu -3'
miRNA:   3'- -CCCGGCAgCUCCc----GGUGUugGUUAGG- -5'
2929 5' -56.5 NC_001493.1 + 42227 0.66 0.873067
Target:  5'- gGGGCaCGUCccGGGGCCGCc-CCuAUCa -3'
miRNA:   3'- -CCCG-GCAGc-UCCCGGUGuuGGuUAGg -5'
2929 5' -56.5 NC_001493.1 + 59334 0.66 0.873067
Target:  5'- cGGUCaauUCGAcGGCCGCGACCAAa-- -3'
miRNA:   3'- cCCGGc--AGCUcCCGGUGUUGGUUagg -5'
2929 5' -56.5 NC_001493.1 + 33314 0.66 0.872342
Target:  5'- cGGGUCGUC---GGCCAgGAUCAguagcuuGUCCa -3'
miRNA:   3'- -CCCGGCAGcucCCGGUgUUGGU-------UAGG- -5'
2929 5' -56.5 NC_001493.1 + 44990 0.66 0.871614
Target:  5'- cGGGCCGUCGAucacuaucggcaGGCCGCGcgGCUca-CCu -3'
miRNA:   3'- -CCCGGCAGCUc-----------CCGGUGU--UGGuuaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.