miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29293 3' -58.7 NC_006150.1 + 1515 0.66 0.830302
Target:  5'- cGGcGGUGCUCcagucgccgcaGGUUGGACAGCgcugugcgGGUa -3'
miRNA:   3'- -UC-CCGCGAG-----------UCGACCUGUCGaa------CCAc -5'
29293 3' -58.7 NC_006150.1 + 169361 0.66 0.829485
Target:  5'- cGGGCcaacaucgaucggGCUCGGaCggagGGcaagGCGGCUUGGUGu -3'
miRNA:   3'- uCCCG-------------CGAGUC-Ga---CC----UGUCGAACCAC- -5'
29293 3' -58.7 NC_006150.1 + 1660 0.66 0.822061
Target:  5'- cGGaGGUGUUUGGCguaGGAUGGgUUGGUGg -3'
miRNA:   3'- -UC-CCGCGAGUCGa--CCUGUCgAACCAC- -5'
29293 3' -58.7 NC_006150.1 + 83025 0.66 0.822061
Target:  5'- cGaGCGCUUgaugAGaacaucGGACAGCUUGGUGg -3'
miRNA:   3'- uCcCGCGAG----UCga----CCUGUCGAACCAC- -5'
29293 3' -58.7 NC_006150.1 + 151951 0.67 0.813656
Target:  5'- uGGuaGCUgGGCUGGA-AGCU-GGUGa -3'
miRNA:   3'- uCCcgCGAgUCGACCUgUCGAaCCAC- -5'
29293 3' -58.7 NC_006150.1 + 126223 0.67 0.778553
Target:  5'- aAGcGGUGCUCAGgUcGGAUcGCaUGGUGg -3'
miRNA:   3'- -UC-CCGCGAGUCgA-CCUGuCGaACCAC- -5'
29293 3' -58.7 NC_006150.1 + 133682 0.69 0.702919
Target:  5'- uGGGGCguccGCUCuauCUGGGCGGUcgGGUGu -3'
miRNA:   3'- -UCCCG----CGAGuc-GACCUGUCGaaCCAC- -5'
29293 3' -58.7 NC_006150.1 + 25381 0.69 0.693121
Target:  5'- uGGGUGUUaccaugagaaAGCUGcGGCAGCUggGGUGa -3'
miRNA:   3'- uCCCGCGAg---------UCGAC-CUGUCGAa-CCAC- -5'
29293 3' -58.7 NC_006150.1 + 88268 0.76 0.32941
Target:  5'- gGGGGCggagcgugcGCUCGGCUGGGCGGCacGGa- -3'
miRNA:   3'- -UCCCG---------CGAGUCGACCUGUCGaaCCac -5'
29293 3' -58.7 NC_006150.1 + 62576 1.09 0.00208
Target:  5'- gAGGGCGCUCAGCUGGACAGCUUGGUGg -3'
miRNA:   3'- -UCCCGCGAGUCGACCUGUCGAACCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.