miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29293 5' -54 NC_006150.1 + 221412 0.66 0.968246
Target:  5'- ---cGCAuucAGCGCCCuGGG-GAGGAAa -3'
miRNA:   3'- auguCGUuu-UCGCGGG-CCCaCUCUUU- -5'
29293 5' -54 NC_006150.1 + 81824 0.66 0.968246
Target:  5'- -uCAGCG--AGCGCCCuGGUuGGGGAu -3'
miRNA:   3'- auGUCGUuuUCGCGGGcCCA-CUCUUu -5'
29293 5' -54 NC_006150.1 + 197309 0.66 0.968246
Target:  5'- cUGCgAGCAAGuucAGCgGCCUcGGUGAGAAu -3'
miRNA:   3'- -AUG-UCGUUU---UCG-CGGGcCCACUCUUu -5'
29293 5' -54 NC_006150.1 + 170274 0.66 0.967935
Target:  5'- -cCGGUAucGGCGCCgcgagccgcuaugUGGGUGAGAc- -3'
miRNA:   3'- auGUCGUuuUCGCGG-------------GCCCACUCUuu -5'
29293 5' -54 NC_006150.1 + 190149 0.66 0.95796
Target:  5'- -cCAGUAGGAGCGCCCGGua-AGGc- -3'
miRNA:   3'- auGUCGUUUUCGCGGGCCcacUCUuu -5'
29293 5' -54 NC_006150.1 + 36805 0.67 0.954076
Target:  5'- cGC-GCAGAcuGCGCaCCGGcGUGAGAu- -3'
miRNA:   3'- aUGuCGUUUu-CGCG-GGCC-CACUCUuu -5'
29293 5' -54 NC_006150.1 + 88619 0.67 0.954076
Target:  5'- uUGCGGUucgcAGcCGCCCGGGacGAGGAGg -3'
miRNA:   3'- -AUGUCGuuu-UC-GCGGGCCCa-CUCUUU- -5'
29293 5' -54 NC_006150.1 + 991 0.67 0.954076
Target:  5'- cGCAGCG--AGCGCCacacgCGGGccgGGGGAAg -3'
miRNA:   3'- aUGUCGUuuUCGCGG-----GCCCa--CUCUUU- -5'
29293 5' -54 NC_006150.1 + 74561 0.67 0.951633
Target:  5'- -cUAGCAAAaacuuguccuuucuuAGCGUCUGGG-GAGGAAa -3'
miRNA:   3'- auGUCGUUU---------------UCGCGGGCCCaCUCUUU- -5'
29293 5' -54 NC_006150.1 + 152742 0.67 0.931063
Target:  5'- cGCGGUAGAGGUugaaggggaggGCUCGGGUGaAGAc- -3'
miRNA:   3'- aUGUCGUUUUCG-----------CGGGCCCAC-UCUuu -5'
29293 5' -54 NC_006150.1 + 108960 0.67 0.931063
Target:  5'- cAUAGCcGAugucuGCGagCCGGGUGAGAGg -3'
miRNA:   3'- aUGUCGuUUu----CGCg-GGCCCACUCUUu -5'
29293 5' -54 NC_006150.1 + 149960 0.68 0.925725
Target:  5'- uUGCAGCGAGGGCggcgcgaccuGCCCGGGcaGGGu-- -3'
miRNA:   3'- -AUGUCGUUUUCG----------CGGGCCCa-CUCuuu -5'
29293 5' -54 NC_006150.1 + 106264 0.68 0.91431
Target:  5'- gACGGCAAcAGCcgcgGCCgCGGGggGAGAGGa -3'
miRNA:   3'- aUGUCGUUuUCG----CGG-GCCCa-CUCUUU- -5'
29293 5' -54 NC_006150.1 + 93483 0.69 0.894685
Target:  5'- aACGGCAGgcggaccGAGCGUCCGuGGUGAu--- -3'
miRNA:   3'- aUGUCGUU-------UUCGCGGGC-CCACUcuuu -5'
29293 5' -54 NC_006150.1 + 127061 0.69 0.888557
Target:  5'- --uGGCAuc-GCcCCCGGGUGGGGAAa -3'
miRNA:   3'- augUCGUuuuCGcGGGCCCACUCUUU- -5'
29293 5' -54 NC_006150.1 + 1465 0.69 0.881525
Target:  5'- aUGguGCAGgcGCGCCagcggguuaaGGGUGAGAGc -3'
miRNA:   3'- -AUguCGUUuuCGCGGg---------CCCACUCUUu -5'
29293 5' -54 NC_006150.1 + 78162 0.69 0.881525
Target:  5'- aUGCGGCAAAAGCGCgCGuacGAGAAGc -3'
miRNA:   3'- -AUGUCGUUUUCGCGgGCccaCUCUUU- -5'
29293 5' -54 NC_006150.1 + 131019 0.69 0.866781
Target:  5'- aGC-GCAAAGGCGCUCGGGgcuGAAc -3'
miRNA:   3'- aUGuCGUUUUCGCGGGCCCacuCUUu -5'
29293 5' -54 NC_006150.1 + 34983 0.71 0.78767
Target:  5'- aGCGGCAAAAGCcuccaguaacuaaaGUCCcgggGGGUGAGAAu -3'
miRNA:   3'- aUGUCGUUUUCG--------------CGGG----CCCACUCUUu -5'
29293 5' -54 NC_006150.1 + 62612 1.04 0.009849
Target:  5'- uUACAGCAAAAGCGCCCGGGUGAGAAAc -3'
miRNA:   3'- -AUGUCGUUUUCGCGGGCCCACUCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.