miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29298 3' -51.2 NC_006150.1 + 37116 0.66 0.997578
Target:  5'- uGCUgaCGGGCaucGACAcgGAGC-CCAGAGg -3'
miRNA:   3'- -UGAa-GUCCG---CUGUa-UUCGuGGUCUCg -5'
29298 3' -51.2 NC_006150.1 + 89641 0.66 0.997578
Target:  5'- --aUCAGGCG-C-UAGGUugCAGAcGCc -3'
miRNA:   3'- ugaAGUCCGCuGuAUUCGugGUCU-CG- -5'
29298 3' -51.2 NC_006150.1 + 140645 0.66 0.997578
Target:  5'- cGCUUCuGGUGACc--GGCacgGCCGGuGCc -3'
miRNA:   3'- -UGAAGuCCGCUGuauUCG---UGGUCuCG- -5'
29298 3' -51.2 NC_006150.1 + 51684 0.66 0.997578
Target:  5'- -aUUCAGGCuucuguguugGGCAagacGGCGCuCAGGGCu -3'
miRNA:   3'- ugAAGUCCG----------CUGUau--UCGUG-GUCUCG- -5'
29298 3' -51.2 NC_006150.1 + 78307 0.66 0.997135
Target:  5'- gGCUUUGGGUGugGc---CAUCGGAGCu -3'
miRNA:   3'- -UGAAGUCCGCugUauucGUGGUCUCG- -5'
29298 3' -51.2 NC_006150.1 + 102561 0.66 0.997135
Target:  5'- cGCUUCAaGCGAU---AGUACCAGAc- -3'
miRNA:   3'- -UGAAGUcCGCUGuauUCGUGGUCUcg -5'
29298 3' -51.2 NC_006150.1 + 110679 0.66 0.996571
Target:  5'- --gUUAGGuCGGCGgguacgaggugucUGAGCGgCAGGGCa -3'
miRNA:   3'- ugaAGUCC-GCUGU-------------AUUCGUgGUCUCG- -5'
29298 3' -51.2 NC_006150.1 + 196816 0.66 0.996045
Target:  5'- ---aCAGGCGuugggaAUAAGCAggcUCAGGGCu -3'
miRNA:   3'- ugaaGUCCGCug----UAUUCGU---GGUCUCG- -5'
29298 3' -51.2 NC_006150.1 + 128159 0.66 0.996045
Target:  5'- aGCaUC-GGCuACGUGGcGCACCAGaAGCa -3'
miRNA:   3'- -UGaAGuCCGcUGUAUU-CGUGGUC-UCG- -5'
29298 3' -51.2 NC_006150.1 + 58852 0.66 0.996045
Target:  5'- gGC-UCAGGCGucuuugaggaACAccGGCGCCGGcgGGCu -3'
miRNA:   3'- -UGaAGUCCGC----------UGUauUCGUGGUC--UCG- -5'
29298 3' -51.2 NC_006150.1 + 36178 0.66 0.996045
Target:  5'- ---gUAGuGCGGCuucGGCGCgCAGAGCa -3'
miRNA:   3'- ugaaGUC-CGCUGuauUCGUG-GUCUCG- -5'
29298 3' -51.2 NC_006150.1 + 221046 0.66 0.995384
Target:  5'- ---gUAGGCgGACAaggggaGAGUugCAGAGCg -3'
miRNA:   3'- ugaaGUCCG-CUGUa-----UUCGugGUCUCG- -5'
29298 3' -51.2 NC_006150.1 + 149999 0.66 0.994946
Target:  5'- gACUgUCAGaGUGcCGUGAGCACUugguguucaugcucuGGGGCg -3'
miRNA:   3'- -UGA-AGUC-CGCuGUAUUCGUGG---------------UCUCG- -5'
29298 3' -51.2 NC_006150.1 + 149314 0.66 0.994636
Target:  5'- -gUUguGGCGGCAgcGGCGgUAGcAGCa -3'
miRNA:   3'- ugAAguCCGCUGUauUCGUgGUC-UCG- -5'
29298 3' -51.2 NC_006150.1 + 220901 0.67 0.992846
Target:  5'- aGCaggCAGGCGGugagaGUGAGgAUCGGGGCu -3'
miRNA:   3'- -UGaa-GUCCGCUg----UAUUCgUGGUCUCG- -5'
29298 3' -51.2 NC_006150.1 + 200342 0.67 0.991676
Target:  5'- -gUUCgAGGCGGuCGggAAGCACCagccaacAGAGCg -3'
miRNA:   3'- ugAAG-UCCGCU-GUa-UUCGUGG-------UCUCG- -5'
29298 3' -51.2 NC_006150.1 + 130849 0.67 0.99061
Target:  5'- gACUg-AGGCGGCAgcauAGCAgCGGGGg -3'
miRNA:   3'- -UGAagUCCGCUGUau--UCGUgGUCUCg -5'
29298 3' -51.2 NC_006150.1 + 103228 0.67 0.99061
Target:  5'- cGCUcUCAGaGuUGACAaccuuccagaUGAGCAgCAGAGCg -3'
miRNA:   3'- -UGA-AGUC-C-GCUGU----------AUUCGUgGUCUCG- -5'
29298 3' -51.2 NC_006150.1 + 206735 0.67 0.989302
Target:  5'- cACUUCAuGGUGACuguuacgagaGUAacAGcCACCAGGGUu -3'
miRNA:   3'- -UGAAGU-CCGCUG----------UAU--UC-GUGGUCUCG- -5'
29298 3' -51.2 NC_006150.1 + 130512 0.68 0.987857
Target:  5'- --gUCAagcGGCGGCAgcAGCAgCAGcAGCg -3'
miRNA:   3'- ugaAGU---CCGCUGUauUCGUgGUC-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.