miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29298 5' -54.3 NC_006150.1 + 168949 0.66 0.978709
Target:  5'- gGACauGCUGCUAcugucgGUCAucugGGCCgcugUCCugGCa -3'
miRNA:   3'- aCUG--CGACGGU------UAGU----UCGG----AGGugCG- -5'
29298 5' -54.3 NC_006150.1 + 175165 0.66 0.978709
Target:  5'- cGAa-CUGCCAAcucuagaCGAGUCUCCucGCGCg -3'
miRNA:   3'- aCUgcGACGGUUa------GUUCGGAGG--UGCG- -5'
29298 5' -54.3 NC_006150.1 + 132996 0.66 0.978709
Target:  5'- aGACGC-GCgGA-CGAGCCUgCACa- -3'
miRNA:   3'- aCUGCGaCGgUUaGUUCGGAgGUGcg -5'
29298 5' -54.3 NC_006150.1 + 147427 0.66 0.978709
Target:  5'- cUGAgccaGCUGUCAAUCAAGgCagCCAaaaGCa -3'
miRNA:   3'- -ACUg---CGACGGUUAGUUCgGa-GGUg--CG- -5'
29298 5' -54.3 NC_006150.1 + 116276 0.66 0.976353
Target:  5'- cGACGaaGUgGAUCGuugGGUCcgCCACGCa -3'
miRNA:   3'- aCUGCgaCGgUUAGU---UCGGa-GGUGCG- -5'
29298 5' -54.3 NC_006150.1 + 12693 0.66 0.976353
Target:  5'- cGAC-C-GCCGGUCGAGUCagcacccCCACGCc -3'
miRNA:   3'- aCUGcGaCGGUUAGUUCGGa------GGUGCG- -5'
29298 5' -54.3 NC_006150.1 + 180242 0.66 0.976353
Target:  5'- gGugGCUGCUGGcCAAGUaacgaUCCACa- -3'
miRNA:   3'- aCugCGACGGUUaGUUCGg----AGGUGcg -5'
29298 5' -54.3 NC_006150.1 + 75985 0.66 0.973811
Target:  5'- uUGugGC-GCCugggggCGAGUCUCCGC-Cg -3'
miRNA:   3'- -ACugCGaCGGuua---GUUCGGAGGUGcG- -5'
29298 5' -54.3 NC_006150.1 + 101272 0.66 0.973811
Target:  5'- gUGugGCUGCU-----GGCaugCCACGCc -3'
miRNA:   3'- -ACugCGACGGuuaguUCGga-GGUGCG- -5'
29298 5' -54.3 NC_006150.1 + 170124 0.66 0.973811
Target:  5'- cUGAUuaUGCCGAUUggGUC-CCAgGUg -3'
miRNA:   3'- -ACUGcgACGGUUAGuuCGGaGGUgCG- -5'
29298 5' -54.3 NC_006150.1 + 59629 0.66 0.971077
Target:  5'- cGAgGCUGaUC-AUCAGGCCaUCACGUc -3'
miRNA:   3'- aCUgCGAC-GGuUAGUUCGGaGGUGCG- -5'
29298 5' -54.3 NC_006150.1 + 9177 0.66 0.971077
Target:  5'- gGAaauCGCUGCCGAacUCAGGgcCCUUUACGg -3'
miRNA:   3'- aCU---GCGACGGUU--AGUUC--GGAGGUGCg -5'
29298 5' -54.3 NC_006150.1 + 757 0.66 0.971077
Target:  5'- gUGGCGCUcgcugcGCCGccuagcGUCAGGCCacCCuCGCc -3'
miRNA:   3'- -ACUGCGA------CGGU------UAGUUCGGa-GGuGCG- -5'
29298 5' -54.3 NC_006150.1 + 69537 0.66 0.971077
Target:  5'- aGACaGCUGCCuggagcUCGAGaacugcgCCACGCu -3'
miRNA:   3'- aCUG-CGACGGuu----AGUUCgga----GGUGCG- -5'
29298 5' -54.3 NC_006150.1 + 133489 0.66 0.971077
Target:  5'- gGAgGCU--UAAUCGGGCgUCCGCGUu -3'
miRNA:   3'- aCUgCGAcgGUUAGUUCGgAGGUGCG- -5'
29298 5' -54.3 NC_006150.1 + 31122 0.66 0.968143
Target:  5'- gGugGCUGacaCGGUCAuggAGUUUgCCAUGCg -3'
miRNA:   3'- aCugCGACg--GUUAGU---UCGGA-GGUGCG- -5'
29298 5' -54.3 NC_006150.1 + 180160 0.66 0.968143
Target:  5'- -uGCGCUGUUAAUCGccgguuccuaGGCUguauggcCCGCGCg -3'
miRNA:   3'- acUGCGACGGUUAGU----------UCGGa------GGUGCG- -5'
29298 5' -54.3 NC_006150.1 + 126288 0.66 0.967838
Target:  5'- aGACGUUGCCGcacAUCccagacgGAGCCgagUCGCaGCa -3'
miRNA:   3'- aCUGCGACGGU---UAG-------UUCGGa--GGUG-CG- -5'
29298 5' -54.3 NC_006150.1 + 30035 0.67 0.966285
Target:  5'- aUGAUGCUGCUguuggacugaagucaAAUgAGGCggUUCCugGCu -3'
miRNA:   3'- -ACUGCGACGG---------------UUAgUUCG--GAGGugCG- -5'
29298 5' -54.3 NC_006150.1 + 172372 0.67 0.965004
Target:  5'- cGGCGCcGCac--CGAGUC-CCGCGCg -3'
miRNA:   3'- aCUGCGaCGguuaGUUCGGaGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.