miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29298 5' -54.3 NC_006150.1 + 172372 0.67 0.965004
Target:  5'- cGGCGCcGCac--CGAGUC-CCGCGCg -3'
miRNA:   3'- aCUGCGaCGguuaGUUCGGaGGUGCG- -5'
29298 5' -54.3 NC_006150.1 + 92839 0.67 0.961654
Target:  5'- -cACGUUGCCAGUCA--UC-CCugGCa -3'
miRNA:   3'- acUGCGACGGUUAGUucGGaGGugCG- -5'
29298 5' -54.3 NC_006150.1 + 119959 0.67 0.961654
Target:  5'- cGACGgUGCaCAuacagCAgagGGCCUCCGCa- -3'
miRNA:   3'- aCUGCgACG-GUua---GU---UCGGAGGUGcg -5'
29298 5' -54.3 NC_006150.1 + 2736 0.67 0.958088
Target:  5'- --uCGCaucuccaaaaUGCCAGUucCAAGCUUCCAaCGCg -3'
miRNA:   3'- acuGCG----------ACGGUUA--GUUCGGAGGU-GCG- -5'
29298 5' -54.3 NC_006150.1 + 45615 0.67 0.954301
Target:  5'- cGGCGCUGCgGAgaCAAa--UCCACGCu -3'
miRNA:   3'- aCUGCGACGgUUa-GUUcggAGGUGCG- -5'
29298 5' -54.3 NC_006150.1 + 70278 0.67 0.954301
Target:  5'- cGGCGCUGCgCcGUCAcGCCggacCCGUGCc -3'
miRNA:   3'- aCUGCGACG-GuUAGUuCGGa---GGUGCG- -5'
29298 5' -54.3 NC_006150.1 + 178589 0.67 0.954301
Target:  5'- uUGugGCaGCCGGagccagCAAGCCacagCgGCGCa -3'
miRNA:   3'- -ACugCGaCGGUUa-----GUUCGGa---GgUGCG- -5'
29298 5' -54.3 NC_006150.1 + 104594 0.67 0.954301
Target:  5'- gGAgGCUGCCAAUCAA-Ca--CAUGCu -3'
miRNA:   3'- aCUgCGACGGUUAGUUcGgagGUGCG- -5'
29298 5' -54.3 NC_006150.1 + 104233 0.67 0.95029
Target:  5'- aGACGCccGUUAAgaaAAGCCgCCAUGCg -3'
miRNA:   3'- aCUGCGa-CGGUUag-UUCGGaGGUGCG- -5'
29298 5' -54.3 NC_006150.1 + 136163 0.67 0.94605
Target:  5'- cUGugGCcGCCAGguuugCAuaaccGCCUCgAUGCa -3'
miRNA:   3'- -ACugCGaCGGUUa----GUu----CGGAGgUGCG- -5'
29298 5' -54.3 NC_006150.1 + 149154 0.67 0.94605
Target:  5'- cGcUGCUGCCccUC-AGCCUCCGC-Ca -3'
miRNA:   3'- aCuGCGACGGuuAGuUCGGAGGUGcG- -5'
29298 5' -54.3 NC_006150.1 + 103508 0.67 0.945614
Target:  5'- --cCGCUGCC-GUCAccGGCCUguccaucauugcgUCGCGCa -3'
miRNA:   3'- acuGCGACGGuUAGU--UCGGA-------------GGUGCG- -5'
29298 5' -54.3 NC_006150.1 + 3632 0.68 0.931937
Target:  5'- cUGACuuUGCCGAaugaGAGCCUCCGgGg -3'
miRNA:   3'- -ACUGcgACGGUUag--UUCGGAGGUgCg -5'
29298 5' -54.3 NC_006150.1 + 58509 0.68 0.931937
Target:  5'- cGAUGUaGCCAcuUCcauGGCCUCCACa- -3'
miRNA:   3'- aCUGCGaCGGUu-AGu--UCGGAGGUGcg -5'
29298 5' -54.3 NC_006150.1 + 124540 0.68 0.931937
Target:  5'- gGGCGUUGCCGagcGUCAuaGGCCucgguUCCACc- -3'
miRNA:   3'- aCUGCGACGGU---UAGU--UCGG-----AGGUGcg -5'
29298 5' -54.3 NC_006150.1 + 133658 0.68 0.926763
Target:  5'- -uGCGCUGCgAGcCGcccucGGUUUCCACGCg -3'
miRNA:   3'- acUGCGACGgUUaGU-----UCGGAGGUGCG- -5'
29298 5' -54.3 NC_006150.1 + 32532 0.68 0.926763
Target:  5'- uUGA-GCc-UCAcgUAGGCCUCCACGCa -3'
miRNA:   3'- -ACUgCGacGGUuaGUUCGGAGGUGCG- -5'
29298 5' -54.3 NC_006150.1 + 214923 0.68 0.921352
Target:  5'- uUGuuCGCUGUCGggUAGGCC-CCACGg -3'
miRNA:   3'- -ACu-GCGACGGUuaGUUCGGaGGUGCg -5'
29298 5' -54.3 NC_006150.1 + 133255 0.68 0.921352
Target:  5'- cUGGCGCaggGCgAuaugugCAGGCUcgUCCGCGCg -3'
miRNA:   3'- -ACUGCGa--CGgUua----GUUCGG--AGGUGCG- -5'
29298 5' -54.3 NC_006150.1 + 170151 0.68 0.921352
Target:  5'- ---aGCUGCaCGGUUucGGCCUCCuCGCu -3'
miRNA:   3'- acugCGACG-GUUAGu-UCGGAGGuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.