miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29300 3' -53.4 NC_006150.1 + 63515 0.66 0.985781
Target:  5'- aGGGGcGGuCGUAGa--CACACGAGACg -3'
miRNA:   3'- aCUCCaUC-GCGUCcagGUGUGCUUUG- -5'
29300 3' -53.4 NC_006150.1 + 32914 0.66 0.984021
Target:  5'- gGAGGcggAGCGC-GGUCgGCgGCGggGa -3'
miRNA:   3'- aCUCCa--UCGCGuCCAGgUG-UGCuuUg -5'
29300 3' -53.4 NC_006150.1 + 117048 0.66 0.984021
Target:  5'- aGGGGUucgucGGCGUccauGGccgCCAUGCGggGCa -3'
miRNA:   3'- aCUCCA-----UCGCGu---CCa--GGUGUGCuuUG- -5'
29300 3' -53.4 NC_006150.1 + 26219 0.66 0.983836
Target:  5'- cGAGG-AGCGCAuaaacuuGGUCCAaGCGccACu -3'
miRNA:   3'- aCUCCaUCGCGU-------CCAGGUgUGCuuUG- -5'
29300 3' -53.4 NC_006150.1 + 3014 0.66 0.9821
Target:  5'- gGAGGcagAGCGCAGGcaCgGCGCGuuggAAGCu -3'
miRNA:   3'- aCUCCa--UCGCGUCCa-GgUGUGC----UUUG- -5'
29300 3' -53.4 NC_006150.1 + 1251 0.66 0.9821
Target:  5'- aUGGGGUGGaGgAGGUgCGC-UGAGACg -3'
miRNA:   3'- -ACUCCAUCgCgUCCAgGUGuGCUUUG- -5'
29300 3' -53.4 NC_006150.1 + 128597 0.66 0.9821
Target:  5'- --uGGUAGCGCuccuGGaUCC--GCGAAGCg -3'
miRNA:   3'- acuCCAUCGCGu---CC-AGGugUGCUUUG- -5'
29300 3' -53.4 NC_006150.1 + 135907 0.66 0.980011
Target:  5'- gGA-GUAGUGCAGuuucgCCGCGCGGAAa -3'
miRNA:   3'- aCUcCAUCGCGUCca---GGUGUGCUUUg -5'
29300 3' -53.4 NC_006150.1 + 1308 0.66 0.980011
Target:  5'- gGAGGgAGUGUAGGggaaACGCGAAGg -3'
miRNA:   3'- aCUCCaUCGCGUCCagg-UGUGCUUUg -5'
29300 3' -53.4 NC_006150.1 + 122740 0.67 0.977745
Target:  5'- cGAGGUGG-GCgAGGaCUGCugGGAAUg -3'
miRNA:   3'- aCUCCAUCgCG-UCCaGGUGugCUUUG- -5'
29300 3' -53.4 NC_006150.1 + 114703 0.67 0.977508
Target:  5'- cGGGGUcgggaauGGUGaAGGUCgCGuCACGAAACg -3'
miRNA:   3'- aCUCCA-------UCGCgUCCAG-GU-GUGCUUUG- -5'
29300 3' -53.4 NC_006150.1 + 178776 0.67 0.975295
Target:  5'- -cGGGgcGCGCuguGGUCCACcAUGGAu- -3'
miRNA:   3'- acUCCauCGCGu--CCAGGUG-UGCUUug -5'
29300 3' -53.4 NC_006150.1 + 36821 0.67 0.972654
Target:  5'- -----cGGCGUgagauAGGUCCGCACGAAGu -3'
miRNA:   3'- acuccaUCGCG-----UCCAGGUGUGCUUUg -5'
29300 3' -53.4 NC_006150.1 + 115836 0.67 0.972654
Target:  5'- gGAGGUGcgaccGCGCGGGUUguUugGGAu- -3'
miRNA:   3'- aCUCCAU-----CGCGUCCAGguGugCUUug -5'
29300 3' -53.4 NC_006150.1 + 139430 0.67 0.963518
Target:  5'- --cGGUAuGCGCGccagcGGUCCGCGC-AGACg -3'
miRNA:   3'- acuCCAU-CGCGU-----CCAGGUGUGcUUUG- -5'
29300 3' -53.4 NC_006150.1 + 70199 0.68 0.956357
Target:  5'- -cAGGaAGcCGCAGGUCCACcCcGAACa -3'
miRNA:   3'- acUCCaUC-GCGUCCAGGUGuGcUUUG- -5'
29300 3' -53.4 NC_006150.1 + 167652 0.68 0.943464
Target:  5'- gUGAGGUAGCcauaguacuguGCAGGcCCcauggucgucggcGCAgGAGGCa -3'
miRNA:   3'- -ACUCCAUCG-----------CGUCCaGG-------------UGUgCUUUG- -5'
29300 3' -53.4 NC_006150.1 + 37042 0.69 0.939301
Target:  5'- --cGGU-GCGCA-GUCUGCGCGAGGCc -3'
miRNA:   3'- acuCCAuCGCGUcCAGGUGUGCUUUG- -5'
29300 3' -53.4 NC_006150.1 + 94251 0.69 0.92936
Target:  5'- --cGGUGGCGUAGGUgUugGCGGu-- -3'
miRNA:   3'- acuCCAUCGCGUCCAgGugUGCUuug -5'
29300 3' -53.4 NC_006150.1 + 119015 0.69 0.918463
Target:  5'- gUGAGGUgggcauuccGGCGCcgcuGG-CCACGCGcgGCa -3'
miRNA:   3'- -ACUCCA---------UCGCGu---CCaGGUGUGCuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.