miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29300 5' -59.5 NC_006150.1 + 86152 0.66 0.858141
Target:  5'- aCCACCaGCAcggaaaUGUGCaCCGuGCGccuGGCGCGc -3'
miRNA:   3'- -GGUGG-CGU------ACACGcGGU-CGC---UCGCGU- -5'
29300 5' -59.5 NC_006150.1 + 118071 0.66 0.858141
Target:  5'- uUACCGC--GUGCGCCgagaAGUGccGCGCAc -3'
miRNA:   3'- gGUGGCGuaCACGCGG----UCGCu-CGCGU- -5'
29300 5' -59.5 NC_006150.1 + 178299 0.66 0.843031
Target:  5'- cUCGCUGUGUGUGUGUguGUGuGUGUg -3'
miRNA:   3'- -GGUGGCGUACACGCGguCGCuCGCGu -5'
29300 5' -59.5 NC_006150.1 + 113832 0.66 0.843031
Target:  5'- uCCGCCGCA---GCGgCAGCuGGUGCc -3'
miRNA:   3'- -GGUGGCGUacaCGCgGUCGcUCGCGu -5'
29300 5' -59.5 NC_006150.1 + 217369 0.66 0.835211
Target:  5'- gCACCGCcc-UGCGCUGGCGcAG-GCAa -3'
miRNA:   3'- gGUGGCGuacACGCGGUCGC-UCgCGU- -5'
29300 5' -59.5 NC_006150.1 + 70319 0.66 0.835211
Target:  5'- gCAUCGCAaGUcGCGCuCGGCGcagcuggaAGCGCu -3'
miRNA:   3'- gGUGGCGUaCA-CGCG-GUCGC--------UCGCGu -5'
29300 5' -59.5 NC_006150.1 + 146551 0.66 0.834419
Target:  5'- aCCACCGCcaucaugaguaGUGUuccgauaGCGCCGGCGA-CGa- -3'
miRNA:   3'- -GGUGGCG-----------UACA-------CGCGGUCGCUcGCgu -5'
29300 5' -59.5 NC_006150.1 + 87596 0.66 0.827221
Target:  5'- cCCACCucGCAUGcUGUGCUGuGgGAGUGCc -3'
miRNA:   3'- -GGUGG--CGUAC-ACGCGGU-CgCUCGCGu -5'
29300 5' -59.5 NC_006150.1 + 182260 0.66 0.827221
Target:  5'- -aACCGCGUGacacgGCGaCCGGCG-GCGa- -3'
miRNA:   3'- ggUGGCGUACa----CGC-GGUCGCuCGCgu -5'
29300 5' -59.5 NC_006150.1 + 605 0.66 0.819069
Target:  5'- aCACCGUcuacacCGCCGGCGcccGGCGCAc -3'
miRNA:   3'- gGUGGCGuacac-GCGGUCGC---UCGCGU- -5'
29300 5' -59.5 NC_006150.1 + 169112 0.67 0.810762
Target:  5'- ---gUGCAUGUGCGCCgAGUG-GUGUAa -3'
miRNA:   3'- ggugGCGUACACGCGG-UCGCuCGCGU- -5'
29300 5' -59.5 NC_006150.1 + 71032 0.67 0.784981
Target:  5'- gCGgCGCAagggGUGCGCUcGCuGGCGCAc -3'
miRNA:   3'- gGUgGCGUa---CACGCGGuCGcUCGCGU- -5'
29300 5' -59.5 NC_006150.1 + 181616 0.67 0.781453
Target:  5'- aCGCUGCAcggcaagguagcgGUGCGCUGGCgGAGCGa- -3'
miRNA:   3'- gGUGGCGUa------------CACGCGGUCG-CUCGCgu -5'
29300 5' -59.5 NC_006150.1 + 68454 0.67 0.776126
Target:  5'- gCACCGCuagcgGCGUCAGCaGAG-GCAg -3'
miRNA:   3'- gGUGGCGuaca-CGCGGUCG-CUCgCGU- -5'
29300 5' -59.5 NC_006150.1 + 26869 0.67 0.776126
Target:  5'- gUACCGCAaGUGcCGCCA-CGAGUaucGCAg -3'
miRNA:   3'- gGUGGCGUaCAC-GCGGUcGCUCG---CGU- -5'
29300 5' -59.5 NC_006150.1 + 102587 0.67 0.776126
Target:  5'- uCCACCGCGguUGUGUGUaCAGacuGCGCu -3'
miRNA:   3'- -GGUGGCGU--ACACGCG-GUCgcuCGCGu -5'
29300 5' -59.5 NC_006150.1 + 89660 0.67 0.767152
Target:  5'- aCGCCGUGUGUGacuGUgGGCGGGC-CAa -3'
miRNA:   3'- gGUGGCGUACACg--CGgUCGCUCGcGU- -5'
29300 5' -59.5 NC_006150.1 + 95496 0.68 0.758069
Target:  5'- cUCAgCGCGUG-GCGCCGGUGuuCGUg -3'
miRNA:   3'- -GGUgGCGUACaCGCGGUCGCucGCGu -5'
29300 5' -59.5 NC_006150.1 + 219780 0.68 0.748885
Target:  5'- -gGCCGCggGUGgaaCGUCcgaGGCGGGCGCGu -3'
miRNA:   3'- ggUGGCGuaCAC---GCGG---UCGCUCGCGU- -5'
29300 5' -59.5 NC_006150.1 + 41382 0.68 0.748885
Target:  5'- uCCGCC-CGUGUGCGCgUAGCGAaUGUc -3'
miRNA:   3'- -GGUGGcGUACACGCG-GUCGCUcGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.