miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29301 3' -60.3 NC_006150.1 + 2662 0.66 0.8306
Target:  5'- uUCGUUGUCGucGCCGUCGCUGuCAGUAu -3'
miRNA:   3'- -GGCGACGGUgcCGGCGGUGAU-GUCGU- -5'
29301 3' -60.3 NC_006150.1 + 75263 0.66 0.8306
Target:  5'- gCCGCgcucaaugagaGCUGCGGCCGugacaCCGCgAUAGCAc -3'
miRNA:   3'- -GGCGa----------CGGUGCCGGC-----GGUGaUGUCGU- -5'
29301 3' -60.3 NC_006150.1 + 117060 0.66 0.8306
Target:  5'- gCGU--CCAUGGCCGCCAUgcGgGGCAc -3'
miRNA:   3'- gGCGacGGUGCCGGCGGUGa-UgUCGU- -5'
29301 3' -60.3 NC_006150.1 + 88734 0.66 0.829005
Target:  5'- gCGCUGCUACuGCCaCCACcguggacguuggACGGCGu -3'
miRNA:   3'- gGCGACGGUGcCGGcGGUGa-----------UGUCGU- -5'
29301 3' -60.3 NC_006150.1 + 103509 0.66 0.822561
Target:  5'- cCCGCUGCCGucacCGGCCuGuCCAUcauUGCGucgcGCAg -3'
miRNA:   3'- -GGCGACGGU----GCCGG-C-GGUG---AUGU----CGU- -5'
29301 3' -60.3 NC_006150.1 + 72144 0.66 0.822561
Target:  5'- gCUGCUGCCGCuaaCGUUGCUGCuGGCAc -3'
miRNA:   3'- -GGCGACGGUGccgGCGGUGAUG-UCGU- -5'
29301 3' -60.3 NC_006150.1 + 91911 0.66 0.822561
Target:  5'- cCCGUacaugGCCACcGuaGCCggGCUGCGGCAg -3'
miRNA:   3'- -GGCGa----CGGUGcCggCGG--UGAUGUCGU- -5'
29301 3' -60.3 NC_006150.1 + 88121 0.66 0.821748
Target:  5'- gUGCaaGCCACGGCuaugcccagguCGCCACUggcgauugcccggACGGCGc -3'
miRNA:   3'- gGCGa-CGGUGCCG-----------GCGGUGA-------------UGUCGU- -5'
29301 3' -60.3 NC_006150.1 + 130651 0.66 0.814365
Target:  5'- -gGCUGCCACGGgCGaCAgauuCUGCAGaCGc -3'
miRNA:   3'- ggCGACGGUGCCgGCgGU----GAUGUC-GU- -5'
29301 3' -60.3 NC_006150.1 + 1853 0.66 0.814365
Target:  5'- gCGCUcGCgACGGCC-CCAUcaaaaGCGGCGg -3'
miRNA:   3'- gGCGA-CGgUGCCGGcGGUGa----UGUCGU- -5'
29301 3' -60.3 NC_006150.1 + 139382 0.66 0.814365
Target:  5'- gCGCUGgCggACGGuCCGCCGcCUGgGGUAc -3'
miRNA:   3'- gGCGACgG--UGCC-GGCGGU-GAUgUCGU- -5'
29301 3' -60.3 NC_006150.1 + 191881 0.66 0.814365
Target:  5'- cCCGCUGCUGUGGUCuaCACUGCcuugaacacaugGGCGu -3'
miRNA:   3'- -GGCGACGGUGCCGGcgGUGAUG------------UCGU- -5'
29301 3' -60.3 NC_006150.1 + 219745 0.66 0.806019
Target:  5'- aCUGCggGCUACGcaGCCGCCAgUccugaucagGCAGCu -3'
miRNA:   3'- -GGCGa-CGGUGC--CGGCGGUgA---------UGUCGu -5'
29301 3' -60.3 NC_006150.1 + 218377 0.66 0.797531
Target:  5'- aUGCUGCCugGuuuGCCGCCA--GgAGCu -3'
miRNA:   3'- gGCGACGGugC---CGGCGGUgaUgUCGu -5'
29301 3' -60.3 NC_006150.1 + 203236 0.66 0.788908
Target:  5'- -aGCaGCCACaGCCGUCGCcuccgccuccGCAGCAg -3'
miRNA:   3'- ggCGaCGGUGcCGGCGGUGa---------UGUCGU- -5'
29301 3' -60.3 NC_006150.1 + 216385 0.66 0.788038
Target:  5'- uCC-CUGCCgagcaccGCaGCCGCCACgGCgAGCAa -3'
miRNA:   3'- -GGcGACGG-------UGcCGGCGGUGaUG-UCGU- -5'
29301 3' -60.3 NC_006150.1 + 171485 0.66 0.780157
Target:  5'- aCCaCUGCUuacccaGGCCGCCGCgccACAGaCAc -3'
miRNA:   3'- -GGcGACGGug----CCGGCGGUGa--UGUC-GU- -5'
29301 3' -60.3 NC_006150.1 + 90883 0.66 0.780157
Target:  5'- cCUGCUGCUGUGGuuGCgGCgaaGCAGCc -3'
miRNA:   3'- -GGCGACGGUGCCggCGgUGa--UGUCGu -5'
29301 3' -60.3 NC_006150.1 + 207622 0.66 0.780157
Target:  5'- aUCGCcaucaucuucauUGCgGCGGCCcgGCCAgUACuGCAg -3'
miRNA:   3'- -GGCG------------ACGgUGCCGG--CGGUgAUGuCGU- -5'
29301 3' -60.3 NC_006150.1 + 296 0.67 0.771286
Target:  5'- gCCGUcgUGCCGaGGCCGCgGaggACGGCu -3'
miRNA:   3'- -GGCG--ACGGUgCCGGCGgUga-UGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.