miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29301 5' -51.5 NC_006150.1 + 2431 0.66 0.997077
Target:  5'- uCGUUCUGCucguucggccuGGCGGCugGUGCCGUugcGGGu -3'
miRNA:   3'- -GCAGGACG-----------UCGCUGuaUACGGUA---UCU- -5'
29301 5' -51.5 NC_006150.1 + 142968 0.66 0.996562
Target:  5'- uCGcCgUGCGG-GACGUgAUGCCGUAGu -3'
miRNA:   3'- -GCaGgACGUCgCUGUA-UACGGUAUCu -5'
29301 5' -51.5 NC_006150.1 + 134584 0.66 0.996562
Target:  5'- ----gUGCAGCGACAg--GCCGUAa- -3'
miRNA:   3'- gcaggACGUCGCUGUauaCGGUAUcu -5'
29301 5' -51.5 NC_006150.1 + 156662 0.66 0.996506
Target:  5'- gGUCCgcaagacUGCAGaGGCuUGUGCCAgUGGAa -3'
miRNA:   3'- gCAGG-------ACGUCgCUGuAUACGGU-AUCU- -5'
29301 5' -51.5 NC_006150.1 + 211356 0.66 0.995307
Target:  5'- gCGUCCauugUGguGCGAaaaggacuguuCAUAUGCCAgguguaguuuccUAGAa -3'
miRNA:   3'- -GCAGG----ACguCGCU-----------GUAUACGGU------------AUCU- -5'
29301 5' -51.5 NC_006150.1 + 88780 0.66 0.995307
Target:  5'- uCGUCCgugGUGGCGGCcgAUGUCGc--- -3'
miRNA:   3'- -GCAGGa--CGUCGCUGuaUACGGUaucu -5'
29301 5' -51.5 NC_006150.1 + 114129 0.66 0.994553
Target:  5'- aGUCCacgUGCAGCugaaugagacGAUAUGUGCCcUGGc -3'
miRNA:   3'- gCAGG---ACGUCG----------CUGUAUACGGuAUCu -5'
29301 5' -51.5 NC_006150.1 + 118269 0.67 0.990503
Target:  5'- uGUCCauggGCAGCGACGUuugGCUGUucuGGc -3'
miRNA:   3'- gCAGGa---CGUCGCUGUAua-CGGUAu--CU- -5'
29301 5' -51.5 NC_006150.1 + 148544 0.67 0.987277
Target:  5'- ---aCUGCGGCGGaacauaccccgcguCAUAUGCCuAUGGAa -3'
miRNA:   3'- gcagGACGUCGCU--------------GUAUACGG-UAUCU- -5'
29301 5' -51.5 NC_006150.1 + 84880 0.68 0.986144
Target:  5'- gCGgggCUUGCGGCggGACAUGuUGCCAUAc- -3'
miRNA:   3'- -GCa--GGACGUCG--CUGUAU-ACGGUAUcu -5'
29301 5' -51.5 NC_006150.1 + 133387 0.68 0.98248
Target:  5'- gCGgggCCUGUGGCGGacgacGCCGUGGAa -3'
miRNA:   3'- -GCa--GGACGUCGCUguauaCGGUAUCU- -5'
29301 5' -51.5 NC_006150.1 + 116348 0.68 0.980395
Target:  5'- cCGUUCgcGCAGCGACAUgggcGUGCgCGUacAGAa -3'
miRNA:   3'- -GCAGGa-CGUCGCUGUA----UACG-GUA--UCU- -5'
29301 5' -51.5 NC_006150.1 + 113831 0.69 0.975678
Target:  5'- -uUCCgccGCAGCGGCAgcugGUGCCucagGGGc -3'
miRNA:   3'- gcAGGa--CGUCGCUGUa---UACGGua--UCU- -5'
29301 5' -51.5 NC_006150.1 + 217011 0.72 0.912375
Target:  5'- uGUCCccuccagucggUGCAGCGACAccacuUGUCGUGGGu -3'
miRNA:   3'- gCAGG-----------ACGUCGCUGUau---ACGGUAUCU- -5'
29301 5' -51.5 NC_006150.1 + 1997 0.73 0.872005
Target:  5'- uCG-CCUGCAGCugaaccgcGCGUGUGCCcgAGAa -3'
miRNA:   3'- -GCaGGACGUCGc-------UGUAUACGGuaUCU- -5'
29301 5' -51.5 NC_006150.1 + 70874 1.1 0.008866
Target:  5'- cCGUCCUGCAGCGACAUAUGCCAUAGAa -3'
miRNA:   3'- -GCAGGACGUCGCUGUAUACGGUAUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.