miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29302 3' -50.9 NC_006150.1 + 141482 0.66 0.998204
Target:  5'- -gGGCCgaGAGCACGUcaaUGccCUUGCg -3'
miRNA:   3'- aaCUGGaaCUCGUGCA---ACuuGAGCGg -5'
29302 3' -50.9 NC_006150.1 + 49346 0.66 0.998204
Target:  5'- -gGAUCUUGAGCGCGcacUGcGAUgcaGCCa -3'
miRNA:   3'- aaCUGGAACUCGUGCa--AC-UUGag-CGG- -5'
29302 3' -50.9 NC_006150.1 + 174902 0.66 0.997857
Target:  5'- aUGugUUUGcGCGCGagGAgACUCGUCu -3'
miRNA:   3'- aACugGAACuCGUGCaaCU-UGAGCGG- -5'
29302 3' -50.9 NC_006150.1 + 119799 0.66 0.996462
Target:  5'- -gGGCCgc-AGCGCGguaGAGCgCGCCa -3'
miRNA:   3'- aaCUGGaacUCGUGCaa-CUUGaGCGG- -5'
29302 3' -50.9 NC_006150.1 + 219275 0.66 0.995858
Target:  5'- -aGAgCUUGGGCAUcgcGAACgCGCCa -3'
miRNA:   3'- aaCUgGAACUCGUGcaaCUUGaGCGG- -5'
29302 3' -50.9 NC_006150.1 + 58675 0.67 0.995171
Target:  5'- -gGugUUcauGCAUGUUGGucGCUCGCCg -3'
miRNA:   3'- aaCugGAacuCGUGCAACU--UGAGCGG- -5'
29302 3' -50.9 NC_006150.1 + 75537 0.67 0.995171
Target:  5'- gUGACCUUGAGCGCcagcuGCUCcuuauCCa -3'
miRNA:   3'- aACUGGAACUCGUGcaacuUGAGc----GG- -5'
29302 3' -50.9 NC_006150.1 + 217278 0.67 0.994394
Target:  5'- -gGAUgggGAGCGCGUUGAcauuccGCUUGUCg -3'
miRNA:   3'- aaCUGgaaCUCGUGCAACU------UGAGCGG- -5'
29302 3' -50.9 NC_006150.1 + 61213 0.67 0.994394
Target:  5'- gUGGCCccuUUGguAGUaACGUUGAAUUCGUCu -3'
miRNA:   3'- aACUGG---AAC--UCG-UGCAACUUGAGCGG- -5'
29302 3' -50.9 NC_006150.1 + 85048 0.68 0.983942
Target:  5'- cUUGAgCUccgUGAGCGCcuugaUGAGCUCGCg -3'
miRNA:   3'- -AACUgGA---ACUCGUGca---ACUUGAGCGg -5'
29302 3' -50.9 NC_006150.1 + 69275 0.69 0.977507
Target:  5'- -gGACCUguUGcGCAUGUUGGcgguagccagaACUCGUCg -3'
miRNA:   3'- aaCUGGA--ACuCGUGCAACU-----------UGAGCGG- -5'
29302 3' -50.9 NC_006150.1 + 136552 0.71 0.942588
Target:  5'- cUGACCUuuuUGaAGCugGggGAAgUCGCUc -3'
miRNA:   3'- aACUGGA---AC-UCGugCaaCUUgAGCGG- -5'
29302 3' -50.9 NC_006150.1 + 107724 0.71 0.932789
Target:  5'- aUGuCCUUcacGGGCgGCGUUGGAC-CGCCa -3'
miRNA:   3'- aACuGGAA---CUCG-UGCAACUUGaGCGG- -5'
29302 3' -50.9 NC_006150.1 + 97192 0.72 0.921998
Target:  5'- cUGuCCgaGAGCACGUUGAGCauugUGCUc -3'
miRNA:   3'- aACuGGaaCUCGUGCAACUUGa---GCGG- -5'
29302 3' -50.9 NC_006150.1 + 29511 0.73 0.890709
Target:  5'- -gGACgaUGAGCGgGUUGAuugACUCGCa -3'
miRNA:   3'- aaCUGgaACUCGUgCAACU---UGAGCGg -5'
29302 3' -50.9 NC_006150.1 + 71235 1.11 0.008735
Target:  5'- gUUGACCUUGAGCACGUUGAACUCGCCg -3'
miRNA:   3'- -AACUGGAACUCGUGCAACUUGAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.