miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29302 5' -50.9 NC_006150.1 + 197310 0.66 0.998384
Target:  5'- --uGCGAGcaagUUCAGCGGC-CUCGGu- -3'
miRNA:   3'- cucUGCUCa---AAGUUGCCGcGAGCUug -5'
29302 5' -50.9 NC_006150.1 + 194820 0.66 0.998069
Target:  5'- aGGAUGAGgaguguggaCAugGaGCGCUCGAGu -3'
miRNA:   3'- cUCUGCUCaaa------GUugC-CGCGAGCUUg -5'
29302 5' -50.9 NC_006150.1 + 204138 0.66 0.998069
Target:  5'- uGGACGAGUU--GGC-GCGCUaCGGGCu -3'
miRNA:   3'- cUCUGCUCAAagUUGcCGCGA-GCUUG- -5'
29302 5' -50.9 NC_006150.1 + 172613 0.66 0.998069
Target:  5'- --cGCGGGacUCGguGCGGCGC-CGGACg -3'
miRNA:   3'- cucUGCUCaaAGU--UGCCGCGaGCUUG- -5'
29302 5' -50.9 NC_006150.1 + 55594 0.66 0.997703
Target:  5'- gGAGugGAGUUgUUGAUGGUuuugGCUUGAAa -3'
miRNA:   3'- -CUCugCUCAA-AGUUGCCG----CGAGCUUg -5'
29302 5' -50.9 NC_006150.1 + 125399 0.66 0.997281
Target:  5'- gGAGAUGGcggcgcgccacGUUUCGcgucuucuuGCGGcCGUUCGAGCu -3'
miRNA:   3'- -CUCUGCU-----------CAAAGU---------UGCC-GCGAGCUUG- -5'
29302 5' -50.9 NC_006150.1 + 157364 0.67 0.995615
Target:  5'- uGGugGAGgaa-GAUGGUGCUgGGGCu -3'
miRNA:   3'- cUCugCUCaaagUUGCCGCGAgCUUG- -5'
29302 5' -50.9 NC_006150.1 + 196283 0.67 0.993195
Target:  5'- uGGACGGGUUUCGuucugGGUGCUgGAu- -3'
miRNA:   3'- cUCUGCUCAAAGUug---CCGCGAgCUug -5'
29302 5' -50.9 NC_006150.1 + 39395 0.68 0.992184
Target:  5'- -uGACGAGagUCGACcGCGCUUGGu- -3'
miRNA:   3'- cuCUGCUCaaAGUUGcCGCGAGCUug -5'
29302 5' -50.9 NC_006150.1 + 804 0.68 0.991748
Target:  5'- cGGGcggcuCGGGUUUC-GCGGCGCgggggagaaaaagCGAGCg -3'
miRNA:   3'- -CUCu----GCUCAAAGuUGCCGCGa------------GCUUG- -5'
29302 5' -50.9 NC_006150.1 + 125134 0.68 0.986901
Target:  5'- -cGACGucucUUCGAUGG-GCUCGAGCa -3'
miRNA:   3'- cuCUGCuca-AAGUUGCCgCGAGCUUG- -5'
29302 5' -50.9 NC_006150.1 + 219535 0.69 0.983395
Target:  5'- aGAGACGAGga-CGGCuGGCGCguucgCGAu- -3'
miRNA:   3'- -CUCUGCUCaaaGUUG-CCGCGa----GCUug -5'
29302 5' -50.9 NC_006150.1 + 180837 0.69 0.982813
Target:  5'- cGAGGCGgccugagcaacagcGGcgUCGGCGuCGCUCGGACa -3'
miRNA:   3'- -CUCUGC--------------UCaaAGUUGCcGCGAGCUUG- -5'
29302 5' -50.9 NC_006150.1 + 45600 0.69 0.981396
Target:  5'- cGAGACGAGcugaccCGGCGCUgCGGAg -3'
miRNA:   3'- -CUCUGCUCaaaguuGCCGCGA-GCUUg -5'
29302 5' -50.9 NC_006150.1 + 202828 0.69 0.976864
Target:  5'- aGGGAUGGGUggaggCGGaGGCGCUUGAAg -3'
miRNA:   3'- -CUCUGCUCAaa---GUUgCCGCGAGCUUg -5'
29302 5' -50.9 NC_006150.1 + 1019 0.7 0.974316
Target:  5'- cAGGCGAGggUgGccugacgcuagGCGGCGCagCGAGCg -3'
miRNA:   3'- cUCUGCUCaaAgU-----------UGCCGCGa-GCUUG- -5'
29302 5' -50.9 NC_006150.1 + 71274 1.11 0.009363
Target:  5'- cGAGACGAGUUUCAACGGCGCUCGAACa -3'
miRNA:   3'- -CUCUGCUCAAAGUUGCCGCGAGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.