miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29303 5' -53.2 NC_006150.1 + 28055 0.66 0.989681
Target:  5'- ---uGGCCAa--GGUCcUCAGCG-GCa -3'
miRNA:   3'- guuuCCGGUgcaCCAGuAGUCGCaCG- -5'
29303 5' -53.2 NC_006150.1 + 1855 0.66 0.988305
Target:  5'- gGGGGGUUGCGUGGa----GGUGUGCg -3'
miRNA:   3'- gUUUCCGGUGCACCaguagUCGCACG- -5'
29303 5' -53.2 NC_006150.1 + 3398 0.66 0.987866
Target:  5'- gGAAGaCCugGUGGacgCGUUcgacacgccuugguGGCGUGCg -3'
miRNA:   3'- gUUUCcGGugCACCa--GUAG--------------UCGCACG- -5'
29303 5' -53.2 NC_006150.1 + 14154 0.66 0.986791
Target:  5'- aAAAGGCCAUG-GGgg--CGGUGUGg -3'
miRNA:   3'- gUUUCCGGUGCaCCaguaGUCGCACg -5'
29303 5' -53.2 NC_006150.1 + 169422 0.66 0.986791
Target:  5'- -uAGGGCUggugcuaGUGGUUcgGUguGCGUGCg -3'
miRNA:   3'- guUUCCGGug-----CACCAG--UAguCGCACG- -5'
29303 5' -53.2 NC_006150.1 + 120537 0.66 0.986791
Target:  5'- aCAGccGCCuccugcuCGcUGGUCAUCGGCGUcGUc -3'
miRNA:   3'- -GUUucCGGu------GC-ACCAGUAGUCGCA-CG- -5'
29303 5' -53.2 NC_006150.1 + 115431 0.66 0.985131
Target:  5'- -uGAGaGCCuGCGUGGUCGUggagagaaugggCAGCGccuccUGCa -3'
miRNA:   3'- guUUC-CGG-UGCACCAGUA------------GUCGC-----ACG- -5'
29303 5' -53.2 NC_006150.1 + 194822 0.66 0.985131
Target:  5'- aGAAGGCCACcUGauuUCAUCuacGGgGUGCu -3'
miRNA:   3'- gUUUCCGGUGcACc--AGUAG---UCgCACG- -5'
29303 5' -53.2 NC_006150.1 + 46167 0.67 0.97919
Target:  5'- gCGGAGGCUACGUGG--GUCuGuUGUGUu -3'
miRNA:   3'- -GUUUCCGGUGCACCagUAGuC-GCACG- -5'
29303 5' -53.2 NC_006150.1 + 32912 0.67 0.97919
Target:  5'- gCGGAGGCggaGCGcGGUCggCGGCGgggauggGCa -3'
miRNA:   3'- -GUUUCCGg--UGCaCCAGuaGUCGCa------CG- -5'
29303 5' -53.2 NC_006150.1 + 158444 0.67 0.97919
Target:  5'- aCAGAGGCCA-GUGGgauGUCAGUaccagGCa -3'
miRNA:   3'- -GUUUCCGGUgCACCag-UAGUCGca---CG- -5'
29303 5' -53.2 NC_006150.1 + 81237 0.67 0.974353
Target:  5'- --uGGGCUACGccaaGGUCAUCcGC-UGCa -3'
miRNA:   3'- guuUCCGGUGCa---CCAGUAGuCGcACG- -5'
29303 5' -53.2 NC_006150.1 + 88154 0.68 0.968443
Target:  5'- -cGAGGCCccgguggGCGggggGGUgGgcgCAGUGUGCa -3'
miRNA:   3'- guUUCCGG-------UGCa---CCAgUa--GUCGCACG- -5'
29303 5' -53.2 NC_006150.1 + 192392 0.68 0.962315
Target:  5'- ---cGGCa--GUGGUUGUCAGUGUGa -3'
miRNA:   3'- guuuCCGgugCACCAGUAGUCGCACg -5'
29303 5' -53.2 NC_006150.1 + 73216 0.68 0.961277
Target:  5'- -uGGGGCCgACGUcuuuguuaaucucuGGaUCAUCAGCGUccGCu -3'
miRNA:   3'- guUUCCGG-UGCA--------------CC-AGUAGUCGCA--CG- -5'
29303 5' -53.2 NC_006150.1 + 2608 0.68 0.958778
Target:  5'- aCAAGGGCgGCGgcucuggaaagGGUCGUagaAGCGguucgGCg -3'
miRNA:   3'- -GUUUCCGgUGCa----------CCAGUAg--UCGCa----CG- -5'
29303 5' -53.2 NC_006150.1 + 123977 0.68 0.952656
Target:  5'- gCAGGGGCaCGcCGUGG-CGUCgcccuucuccguaaaGGUGUGCa -3'
miRNA:   3'- -GUUUCCG-GU-GCACCaGUAG---------------UCGCACG- -5'
29303 5' -53.2 NC_006150.1 + 454 0.7 0.904635
Target:  5'- gGGGGGCC-CGggGGUCG-CGGCGggggGCg -3'
miRNA:   3'- gUUUCCGGuGCa-CCAGUaGUCGCa---CG- -5'
29303 5' -53.2 NC_006150.1 + 167674 0.71 0.877932
Target:  5'- --cAGGCCcCaUGGUCGUCGGCGcaggagGCa -3'
miRNA:   3'- guuUCCGGuGcACCAGUAGUCGCa-----CG- -5'
29303 5' -53.2 NC_006150.1 + 118817 0.73 0.796805
Target:  5'- -uGAGGCCACGcuccaUGG-CGUCGGCgGUGUu -3'
miRNA:   3'- guUUCCGGUGC-----ACCaGUAGUCG-CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.