miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29309 5' -58.5 NC_006150.1 + 30989 0.66 0.872839
Target:  5'- cCCACGGGCUcuACuUUGGuAGUAC-CCAc -3'
miRNA:   3'- uGGUGCCCGG--UG-AGCC-UCAUGuGGUa -5'
29309 5' -58.5 NC_006150.1 + 152556 0.66 0.865678
Target:  5'- aGCCGuguCGuaCCACgaaacCGGAGUACACCAg -3'
miRNA:   3'- -UGGU---GCccGGUGa----GCCUCAUGUGGUa -5'
29309 5' -58.5 NC_006150.1 + 31266 0.67 0.835119
Target:  5'- uCCACGuGagaGCaUCGGAGUACACCAc -3'
miRNA:   3'- uGGUGCcCgg-UG-AGCCUCAUGUGGUa -5'
29309 5' -58.5 NC_006150.1 + 75830 0.67 0.834318
Target:  5'- cACCACGGGaucacuguaaaccCCAcCUCGG-GUucgaACACCGUg -3'
miRNA:   3'- -UGGUGCCC-------------GGU-GAGCCuCA----UGUGGUA- -5'
29309 5' -58.5 NC_006150.1 + 221446 0.68 0.775276
Target:  5'- cGCCAgCGcGCCACccCGGAGUGCcuGCCAg -3'
miRNA:   3'- -UGGU-GCcCGGUGa-GCCUCAUG--UGGUa -5'
29309 5' -58.5 NC_006150.1 + 110777 0.68 0.75698
Target:  5'- aACCGCuGGauGCCACaCGGcGUGCACCAc -3'
miRNA:   3'- -UGGUG-CC--CGGUGaGCCuCAUGUGGUa -5'
29309 5' -58.5 NC_006150.1 + 161197 0.68 0.747673
Target:  5'- uGCCugGGGaCG-UCGGAGgaGCACCAUa -3'
miRNA:   3'- -UGGugCCCgGUgAGCCUCa-UGUGGUA- -5'
29309 5' -58.5 NC_006150.1 + 88482 0.69 0.728783
Target:  5'- gGCUGCGcGGCCGCUCccuGGAGaACGCgCAUg -3'
miRNA:   3'- -UGGUGC-CCGGUGAG---CCUCaUGUG-GUA- -5'
29309 5' -58.5 NC_006150.1 + 62453 0.69 0.719216
Target:  5'- aGCCGauuCGGGCCACgggCGGGGa--GCCAa -3'
miRNA:   3'- -UGGU---GCCCGGUGa--GCCUCaugUGGUa -5'
29309 5' -58.5 NC_006150.1 + 170307 0.71 0.621044
Target:  5'- cAUgACGGGCCGCUCcGAGUcaaagccugcACGCCGg -3'
miRNA:   3'- -UGgUGCCCGGUGAGcCUCA----------UGUGGUa -5'
29309 5' -58.5 NC_006150.1 + 216852 0.71 0.611148
Target:  5'- cACCACaGGCUAUgc-GAGUACACCAUg -3'
miRNA:   3'- -UGGUGcCCGGUGagcCUCAUGUGGUA- -5'
29309 5' -58.5 NC_006150.1 + 85099 1.05 0.003986
Target:  5'- cACCACGGGCCACUCGGAGUACACCAUa -3'
miRNA:   3'- -UGGUGCCCGGUGAGCCUCAUGUGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.