miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29310 3' -53.5 NC_006150.1 + 119006 0.66 0.985781
Target:  5'- uGGUUuGGCGUgAGGUggGCAuuccGGCGCCg -3'
miRNA:   3'- cUUAGuCCGCGaUCCAa-CGU----CUGCGG- -5'
29310 3' -53.5 NC_006150.1 + 119808 0.66 0.985781
Target:  5'- ---gCAGGUGCgGGGccGCAGcgcgguagagcGCGCCa -3'
miRNA:   3'- cuuaGUCCGCGaUCCaaCGUC-----------UGCGG- -5'
29310 3' -53.5 NC_006150.1 + 96276 0.66 0.984021
Target:  5'- uGAAUCcGGUGUcugGGGUUGguGGCacuaagaguugGCCa -3'
miRNA:   3'- -CUUAGuCCGCGa--UCCAACguCUG-----------CGG- -5'
29310 3' -53.5 NC_006150.1 + 102844 0.66 0.9821
Target:  5'- ---aCAGGUGCgggaugacGGUcuuuccguguggUGUAGGCGCCu -3'
miRNA:   3'- cuuaGUCCGCGau------CCA------------ACGUCUGCGG- -5'
29310 3' -53.5 NC_006150.1 + 180792 0.66 0.9821
Target:  5'- uGAGggAGGCGacggAGGUgaUGCAGACGaCa -3'
miRNA:   3'- -CUUagUCCGCga--UCCA--ACGUCUGCgG- -5'
29310 3' -53.5 NC_006150.1 + 76353 0.66 0.97935
Target:  5'- ---aCGGGCGC-AGGUggGCaaguauuguguucaGGACGCUg -3'
miRNA:   3'- cuuaGUCCGCGaUCCAa-CG--------------UCUGCGG- -5'
29310 3' -53.5 NC_006150.1 + 65434 0.66 0.977745
Target:  5'- cGggUCGGGCuaGCUcGGcgGCcguGGCGCUg -3'
miRNA:   3'- -CuuAGUCCG--CGAuCCaaCGu--CUGCGG- -5'
29310 3' -53.5 NC_006150.1 + 34509 0.66 0.977745
Target:  5'- gGAGUCuGGCGagAGGUg--GGGCGCCc -3'
miRNA:   3'- -CUUAGuCCGCgaUCCAacgUCUGCGG- -5'
29310 3' -53.5 NC_006150.1 + 48846 0.67 0.975295
Target:  5'- ----gGGGUGCUAGGUUGCuucCGUa -3'
miRNA:   3'- cuuagUCCGCGAUCCAACGucuGCGg -5'
29310 3' -53.5 NC_006150.1 + 216938 0.67 0.972654
Target:  5'- cGggUCAGGCacgGCUAGcaacaGCAGugGUg -3'
miRNA:   3'- -CuuAGUCCG---CGAUCcaa--CGUCugCGg -5'
29310 3' -53.5 NC_006150.1 + 24415 0.67 0.972654
Target:  5'- gGggUCAGGU-UUAGGUcGCAcAUGCCa -3'
miRNA:   3'- -CuuAGUCCGcGAUCCAaCGUcUGCGG- -5'
29310 3' -53.5 NC_006150.1 + 113020 0.67 0.969816
Target:  5'- ----uGGGgGCUAGGUccUGUaggcugaaugAGGCGCCu -3'
miRNA:   3'- cuuagUCCgCGAUCCA--ACG----------UCUGCGG- -5'
29310 3' -53.5 NC_006150.1 + 156417 0.68 0.956357
Target:  5'- uGAUCAGGCaGCUAagauGUaUGCAGugGgCCa -3'
miRNA:   3'- cUUAGUCCG-CGAUc---CA-ACGUCugC-GG- -5'
29310 3' -53.5 NC_006150.1 + 114592 0.68 0.948294
Target:  5'- ---cCAGG-GCUAGcUUGCGGACGUa -3'
miRNA:   3'- cuuaGUCCgCGAUCcAACGUCUGCGg -5'
29310 3' -53.5 NC_006150.1 + 88703 0.68 0.943915
Target:  5'- -cGUCGGaGCGCUAGGgcgGCccGGACGaCg -3'
miRNA:   3'- cuUAGUC-CGCGAUCCaa-CG--UCUGCgG- -5'
29310 3' -53.5 NC_006150.1 + 130658 0.68 0.943915
Target:  5'- gGGcgCAGGCuGCcacGGGcgacagauucUGCAGACGCCg -3'
miRNA:   3'- -CUuaGUCCG-CGa--UCCa---------ACGUCUGCGG- -5'
29310 3' -53.5 NC_006150.1 + 87824 0.68 0.943915
Target:  5'- cGAggUGGGgGCUGGGcaUGCAGACcGCUu -3'
miRNA:   3'- -CUuaGUCCgCGAUCCa-ACGUCUG-CGG- -5'
29310 3' -53.5 NC_006150.1 + 130144 0.69 0.924031
Target:  5'- ---cCAGcGUGCUAGGguuuUGCAGAaggcUGCCg -3'
miRNA:   3'- cuuaGUC-CGCGAUCCa---ACGUCU----GCGG- -5'
29310 3' -53.5 NC_006150.1 + 51299 0.69 0.918463
Target:  5'- aAGUCAGGCaCcGGGUuagGCAGuAUGCCa -3'
miRNA:   3'- cUUAGUCCGcGaUCCAa--CGUC-UGCGG- -5'
29310 3' -53.5 NC_006150.1 + 92023 0.7 0.880119
Target:  5'- cGAGgu-GGUagaGCUGGGUUGCgAGGCGUCg -3'
miRNA:   3'- -CUUaguCCG---CGAUCCAACG-UCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.